Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4214 and GFF4215 are separated by 219 nucleotides GFF4215 and GFF4216 are separated by 398 nucleotides
GFF4214 - High-affinity branched-chain amino acid transport system permease protein LivH, at 242,960 to 243,832
GFF4214
GFF4215 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 244,052 to 245,200
GFF4215
GFF4216 - 2-halobenzoate 1,2-dioxygenase large subunit, at 245,599 to 246,876
GFF4216
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.065 kb on - strand, within GFF4214 at 243.065 kb on - strand, within GFF4214 at 243.065 kb on - strand, within GFF4214 at 243.065 kb on - strand, within GFF4214 at 243.066 kb on + strand, within GFF4214 at 243.067 kb on - strand, within GFF4214 at 243.067 kb on - strand, within GFF4214 at 243.067 kb on - strand, within GFF4214 at 243.181 kb on + strand, within GFF4214 at 243.181 kb on + strand, within GFF4214 at 243.485 kb on - strand, within GFF4214 at 243.747 kb on + strand at 243.747 kb on + strand at 243.747 kb on + strand at 243.748 kb on - strand at 243.780 kb on + strand at 243.781 kb on - strand at 243.781 kb on - strand at 243.781 kb on - strand at 244.054 kb on - strand at 244.054 kb on - strand at 244.138 kb on - strand at 244.143 kb on + strand at 244.143 kb on + strand at 244.264 kb on - strand, within GFF4215 at 244.321 kb on - strand, within GFF4215 at 244.321 kb on - strand, within GFF4215 at 244.465 kb on - strand, within GFF4215 at 244.465 kb on - strand, within GFF4215 at 244.465 kb on - strand, within GFF4215 at 244.465 kb on - strand, within GFF4215 at 244.494 kb on + strand, within GFF4215 at 244.495 kb on - strand, within GFF4215 at 244.495 kb on - strand, within GFF4215 at 244.495 kb on - strand, within GFF4215 at 244.532 kb on + strand, within GFF4215 at 244.611 kb on + strand, within GFF4215 at 244.987 kb on - strand, within GFF4215 at 245.422 kb on + strand at 245.686 kb on + strand at 245.744 kb on - strand, within GFF4216 at 245.929 kb on + strand, within GFF4216 at 245.971 kb on + strand, within GFF4216 at 245.971 kb on + strand, within GFF4216 at 245.972 kb on - strand, within GFF4216 at 245.989 kb on + strand, within GFF4216 at 245.989 kb on + strand, within GFF4216 at 245.990 kb on - strand, within GFF4216 at 245.990 kb on - strand, within GFF4216 at 245.990 kb on - strand, within GFF4216 at 246.046 kb on + strand, within GFF4216 at 246.047 kb on - strand, within GFF4216
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 243,064 + GFF4214 0.12 +0.4 243,064 + GFF4214 0.12 -0.6 243,064 + GFF4214 0.12 -0.4 243,064 + GFF4214 0.12 -1.0 243,064 + GFF4214 0.12 +1.6 243,064 + GFF4214 0.12 -2.0 243,065 - GFF4214 0.12 -1.0 243,065 - GFF4214 0.12 +0.1 243,065 - GFF4214 0.12 +0.2 243,065 - GFF4214 0.12 +0.4 243,066 + GFF4214 0.12 +1.4 243,067 - GFF4214 0.12 -0.9 243,067 - GFF4214 0.12 +0.1 243,067 - GFF4214 0.12 -0.8 243,181 + GFF4214 0.25 +0.8 243,181 + GFF4214 0.25 +0.0 243,485 - GFF4214 0.60 -0.1 243,747 + +0.4 243,747 + -2.1 243,747 + -1.9 243,748 - -0.8 243,780 + +0.7 243,781 - -0.3 243,781 - -0.5 243,781 - -0.7 244,054 - -0.2 244,054 - +0.1 244,138 - +0.1 244,143 + +1.7 244,143 + +0.1 244,264 - GFF4215 0.18 -0.0 244,321 - GFF4215 0.23 -0.3 244,321 - GFF4215 0.23 +0.3 244,465 - GFF4215 0.36 +0.5 244,465 - GFF4215 0.36 -0.1 244,465 - GFF4215 0.36 +0.1 244,465 - GFF4215 0.36 -0.7 244,494 + GFF4215 0.38 +2.0 244,495 - GFF4215 0.39 +0.0 244,495 - GFF4215 0.39 +0.3 244,495 - GFF4215 0.39 -1.0 244,532 + GFF4215 0.42 -0.9 244,611 + GFF4215 0.49 +1.0 244,987 - GFF4215 0.81 -0.6 245,422 + -0.6 245,686 + +0.8 245,744 - GFF4216 0.11 +0.5 245,929 + GFF4216 0.26 +0.9 245,971 + GFF4216 0.29 -0.5 245,971 + GFF4216 0.29 -1.4 245,972 - GFF4216 0.29 -0.9 245,989 + GFF4216 0.31 +0.9 245,989 + GFF4216 0.31 +0.1 245,990 - GFF4216 0.31 +0.6 245,990 - GFF4216 0.31 +0.3 245,990 - GFF4216 0.31 +1.2 246,046 + GFF4216 0.35 -1.3 246,047 - GFF4216 0.35 +0.2
Or see this region's nucleotide sequence