Strain Fitness in Xanthobacter sp. DMC5 around GFF4186

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4185 and GFF4186 are separated by 425 nucleotidesGFF4186 and GFF4187 are separated by 141 nucleotides GFF4185 - putative protein, at 200,796 to 201,932 GFF4185 GFF4186 - Trimethylamine dehydrogenase, at 202,358 to 204,565 GFF4186 GFF4187 - putative iron-sulfur-binding oxidoreductase FadF, at 204,707 to 206,869 GFF4187 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -2 -1 0 1at 201.402 kb on + strand, within GFF4185at 201.402 kb on + strand, within GFF4185at 201.402 kb on + strand, within GFF4185at 201.402 kb on + strand, within GFF4185at 201.402 kb on + strand, within GFF4185at 201.403 kb on - strand, within GFF4185at 201.403 kb on - strand, within GFF4185at 201.403 kb on - strand, within GFF4185at 201.403 kb on - strand, within GFF4185at 201.403 kb on - strand, within GFF4185at 201.433 kb on + strand, within GFF4185at 201.434 kb on - strand, within GFF4185at 201.434 kb on - strand, within GFF4185at 201.616 kb on + strand, within GFF4185at 201.617 kb on - strand, within GFF4185at 201.762 kb on + strand, within GFF4185at 201.762 kb on + strand, within GFF4185at 201.762 kb on + strand, within GFF4185at 201.763 kb on - strand, within GFF4185at 201.898 kb on - strandat 201.898 kb on - strandat 201.898 kb on - strandat 201.898 kb on - strandat 201.898 kb on - strandat 201.903 kb on + strandat 201.903 kb on + strandat 201.904 kb on - strandat 201.905 kb on + strandat 201.976 kb on - strandat 202.196 kb on - strandat 202.340 kb on + strandat 202.344 kb on + strandat 202.388 kb on + strandat 202.389 kb on - strandat 202.389 kb on - strandat 202.389 kb on - strandat 202.445 kb on + strandat 202.446 kb on - strandat 202.446 kb on - strandat 202.550 kb on + strandat 202.658 kb on + strand, within GFF4186at 202.659 kb on - strand, within GFF4186at 202.748 kb on + strand, within GFF4186at 202.748 kb on + strand, within GFF4186at 202.748 kb on + strand, within GFF4186at 202.748 kb on + strand, within GFF4186at 202.749 kb on - strand, within GFF4186at 202.775 kb on + strand, within GFF4186at 202.776 kb on - strand, within GFF4186at 202.776 kb on - strand, within GFF4186at 202.776 kb on - strand, within GFF4186at 202.776 kb on - strand, within GFF4186at 202.823 kb on + strand, within GFF4186at 202.824 kb on - strand, within GFF4186at 202.872 kb on - strand, within GFF4186at 202.872 kb on - strand, within GFF4186at 202.893 kb on - strand, within GFF4186at 202.922 kb on + strand, within GFF4186at 202.943 kb on + strand, within GFF4186at 203.610 kb on - strand, within GFF4186at 203.610 kb on - strand, within GFF4186at 203.610 kb on - strand, within GFF4186at 203.652 kb on - strand, within GFF4186at 203.696 kb on + strand, within GFF4186at 203.696 kb on + strand, within GFF4186at 203.696 kb on + strand, within GFF4186at 203.696 kb on + strand, within GFF4186at 203.696 kb on + strand, within GFF4186at 203.696 kb on + strand, within GFF4186at 203.697 kb on - strand, within GFF4186at 203.697 kb on - strand, within GFF4186at 203.990 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.993 kb on + strand, within GFF4186at 203.994 kb on - strand, within GFF4186at 204.074 kb on + strand, within GFF4186at 204.188 kb on + strand, within GFF4186at 204.188 kb on + strand, within GFF4186at 204.188 kb on + strand, within GFF4186at 204.189 kb on - strand, within GFF4186at 204.211 kb on + strand, within GFF4186at 204.211 kb on + strand, within GFF4186at 204.212 kb on - strand, within GFF4186at 204.221 kb on + strand, within GFF4186at 204.279 kb on - strand, within GFF4186at 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.383 kb on + strandat 204.384 kb on - strandat 204.512 kb on + strandat 204.513 kb on - strandat 204.513 kb on - strandat 204.524 kb on + strandat 204.542 kb on + strandat 204.543 kb on - strandat 204.563 kb on + strandat 204.563 kb on + strandat 204.563 kb on + strandat 204.564 kb on - strandat 204.564 kb on - strandat 204.785 kb on + strandat 204.789 kb on - strandat 204.791 kb on - strandat 204.794 kb on + strandat 204.795 kb on - strandat 204.851 kb on + strandat 205.091 kb on + strand, within GFF4187at 205.091 kb on + strand, within GFF4187at 205.092 kb on - strand, within GFF4187at 205.092 kb on - strand, within GFF4187at 205.152 kb on - strand, within GFF4187at 205.152 kb on - strand, within GFF4187at 205.197 kb on - strand, within GFF4187at 205.197 kb on - strand, within GFF4187at 205.197 kb on - strand, within GFF4187at 205.505 kb on + strand, within GFF4187at 205.506 kb on - strand, within GFF4187

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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201,402 + GFF4185 0.53 +0.3
201,402 + GFF4185 0.53 -0.4
201,402 + GFF4185 0.53 -0.8
201,402 + GFF4185 0.53 +1.5
201,402 + GFF4185 0.53 -1.2
201,403 - GFF4185 0.53 -0.6
201,403 - GFF4185 0.53 -0.1
201,403 - GFF4185 0.53 -0.3
201,403 - GFF4185 0.53 -0.3
201,403 - GFF4185 0.53 -0.6
201,433 + GFF4185 0.56 +1.3
201,434 - GFF4185 0.56 +0.1
201,434 - GFF4185 0.56 -0.3
201,616 + GFF4185 0.72 +0.4
201,617 - GFF4185 0.72 +0.0
201,762 + GFF4185 0.85 +1.2
201,762 + GFF4185 0.85 -0.9
201,762 + GFF4185 0.85 +0.4
201,763 - GFF4185 0.85 +0.0
201,898 - +0.0
201,898 - +0.3
201,898 - -1.7
201,898 - -1.1
201,898 - -0.1
201,903 + -0.1
201,903 + +0.2
201,904 - +0.3
201,905 + -0.5
201,976 - +1.0
202,196 - -0.7
202,340 + -0.7
202,344 + +0.1
202,388 + -0.9
202,389 - +0.6
202,389 - -0.6
202,389 - -1.4
202,445 + -0.7
202,446 - -0.8
202,446 - +0.0
202,550 + +0.9
202,658 + GFF4186 0.14 +1.6
202,659 - GFF4186 0.14 +0.5
202,748 + GFF4186 0.18 -0.7
202,748 + GFF4186 0.18 -0.3
202,748 + GFF4186 0.18 +0.1
202,748 + GFF4186 0.18 -0.8
202,749 - GFF4186 0.18 +0.1
202,775 + GFF4186 0.19 -0.6
202,776 - GFF4186 0.19 +1.6
202,776 - GFF4186 0.19 -0.5
202,776 - GFF4186 0.19 -0.1
202,776 - GFF4186 0.19 +0.7
202,823 + GFF4186 0.21 +0.4
202,824 - GFF4186 0.21 +0.5
202,872 - GFF4186 0.23 -0.2
202,872 - GFF4186 0.23 +0.7
202,893 - GFF4186 0.24 -0.1
202,922 + GFF4186 0.26 -0.3
202,943 + GFF4186 0.26 +0.4
203,610 - GFF4186 0.57 +0.7
203,610 - GFF4186 0.57 -1.2
203,610 - GFF4186 0.57 -0.7
203,652 - GFF4186 0.59 +0.5
203,696 + GFF4186 0.61 -1.0
203,696 + GFF4186 0.61 +0.5
203,696 + GFF4186 0.61 +0.7
203,696 + GFF4186 0.61 +0.2
203,696 + GFF4186 0.61 +0.1
203,696 + GFF4186 0.61 +0.6
203,697 - GFF4186 0.61 -0.2
203,697 - GFF4186 0.61 -0.0
203,990 + GFF4186 0.74 +0.3
203,993 + GFF4186 0.74 +0.1
203,993 + GFF4186 0.74 -0.3
203,993 + GFF4186 0.74 +0.0
203,993 + GFF4186 0.74 -0.0
203,993 + GFF4186 0.74 +0.1
203,994 - GFF4186 0.74 +0.1
204,074 + GFF4186 0.78 +0.8
204,188 + GFF4186 0.83 -0.1
204,188 + GFF4186 0.83 -0.1
204,188 + GFF4186 0.83 +0.5
204,189 - GFF4186 0.83 -0.1
204,211 + GFF4186 0.84 +0.6
204,211 + GFF4186 0.84 -2.3
204,212 - GFF4186 0.84 +1.6
204,221 + GFF4186 0.84 -1.3
204,279 - GFF4186 0.87 +0.5
204,383 + -0.4
204,383 + -0.2
204,383 + -2.0
204,383 + +0.6
204,383 + +1.1
204,383 + +1.1
204,383 + +0.0
204,384 - +0.2
204,512 + -0.3
204,513 - +0.4
204,513 - -0.1
204,524 + -0.7
204,542 + -0.9
204,543 - +0.3
204,563 + -0.3
204,563 + +0.5
204,563 + +0.0
204,564 - -1.4
204,564 - -0.6
204,785 + +0.1
204,789 - -0.2
204,791 - -0.1
204,794 + +0.1
204,795 - -2.6
204,851 + +0.1
205,091 + GFF4187 0.18 +0.3
205,091 + GFF4187 0.18 +0.4
205,092 - GFF4187 0.18 +0.8
205,092 - GFF4187 0.18 -0.0
205,152 - GFF4187 0.21 -0.2
205,152 - GFF4187 0.21 -1.1
205,197 - GFF4187 0.23 -0.7
205,197 - GFF4187 0.23 -0.6
205,197 - GFF4187 0.23 -0.0
205,505 + GFF4187 0.37 -0.4
205,506 - GFF4187 0.37 +0.8

Or see this region's nucleotide sequence