Strain Fitness in Xanthobacter sp. DMC5 around GFF4120

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4119 and GFF4120 are separated by 89 nucleotidesGFF4120 and GFF4121 are separated by 92 nucleotidesGFF4121 and GFF4122 are separated by 87 nucleotides GFF4119 - 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1 (10),2-diene-4-oate hydrolase, at 117,304 to 118,266 GFF4119 GFF4120 - hypothetical protein, at 118,356 to 119,615 GFF4120 GFF4121 - hypothetical protein, at 119,708 to 120,127 GFF4121 GFF4122 - Cyclic beta-(1,2)-glucan synthase NdvB, at 120,215 to 128,776 GFF4122 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1at 117.397 kb on - strandat 117.408 kb on + strand, within GFF4119at 117.408 kb on + strand, within GFF4119at 117.408 kb on + strand, within GFF4119at 117.460 kb on + strand, within GFF4119at 117.460 kb on + strand, within GFF4119at 117.461 kb on - strand, within GFF4119at 117.461 kb on - strand, within GFF4119at 117.461 kb on - strand, within GFF4119at 117.461 kb on - strand, within GFF4119at 117.626 kb on + strand, within GFF4119at 117.627 kb on - strand, within GFF4119at 117.627 kb on - strand, within GFF4119at 117.627 kb on - strand, within GFF4119at 117.788 kb on - strand, within GFF4119at 117.788 kb on - strand, within GFF4119at 117.788 kb on - strand, within GFF4119at 117.790 kb on + strand, within GFF4119at 117.790 kb on + strand, within GFF4119at 117.790 kb on + strand, within GFF4119at 117.791 kb on - strand, within GFF4119at 117.793 kb on + strand, within GFF4119at 117.794 kb on - strand, within GFF4119at 117.866 kb on - strand, within GFF4119at 117.867 kb on + strand, within GFF4119at 117.867 kb on + strand, within GFF4119at 117.867 kb on + strand, within GFF4119at 117.867 kb on + strand, within GFF4119at 117.868 kb on - strand, within GFF4119at 117.868 kb on - strand, within GFF4119at 117.868 kb on - strand, within GFF4119at 117.868 kb on - strand, within GFF4119at 118.037 kb on - strand, within GFF4119at 118.054 kb on + strand, within GFF4119at 118.054 kb on + strand, within GFF4119at 118.114 kb on - strand, within GFF4119at 118.146 kb on + strand, within GFF4119at 118.146 kb on + strand, within GFF4119at 118.146 kb on + strand, within GFF4119at 118.344 kb on + strandat 118.345 kb on - strandat 118.351 kb on + strandat 118.351 kb on + strandat 118.351 kb on + strandat 118.351 kb on + strandat 118.352 kb on - strandat 118.368 kb on + strandat 118.368 kb on + strandat 118.369 kb on - strandat 118.369 kb on - strandat 118.381 kb on - strandat 118.573 kb on + strand, within GFF4120at 118.573 kb on + strand, within GFF4120at 118.573 kb on + strand, within GFF4120at 118.574 kb on - strand, within GFF4120at 118.574 kb on - strand, within GFF4120at 118.574 kb on - strand, within GFF4120at 118.621 kb on + strand, within GFF4120at 118.623 kb on - strand, within GFF4120at 118.773 kb on - strand, within GFF4120at 118.856 kb on - strand, within GFF4120at 118.856 kb on - strand, within GFF4120at 118.856 kb on - strand, within GFF4120at 118.911 kb on + strand, within GFF4120at 118.912 kb on - strand, within GFF4120at 118.912 kb on - strand, within GFF4120at 118.944 kb on - strand, within GFF4120at 118.944 kb on - strand, within GFF4120at 118.944 kb on - strand, within GFF4120at 119.060 kb on - strand, within GFF4120at 119.119 kb on + strand, within GFF4120at 119.195 kb on - strand, within GFF4120at 119.195 kb on - strand, within GFF4120at 119.195 kb on - strand, within GFF4120at 119.195 kb on - strand, within GFF4120at 119.203 kb on + strand, within GFF4120at 119.234 kb on + strand, within GFF4120at 119.234 kb on + strand, within GFF4120at 119.620 kb on + strandat 119.631 kb on - strandat 119.845 kb on - strand, within GFF4121at 119.848 kb on + strand, within GFF4121at 119.848 kb on + strand, within GFF4121at 119.849 kb on - strand, within GFF4121at 119.849 kb on - strand, within GFF4121at 119.890 kb on + strand, within GFF4121at 119.890 kb on + strand, within GFF4121at 119.890 kb on + strand, within GFF4121at 119.898 kb on + strand, within GFF4121at 119.899 kb on - strand, within GFF4121at 120.012 kb on + strand, within GFF4121at 120.070 kb on + strand, within GFF4121at 120.105 kb on - strandat 120.271 kb on + strandat 120.363 kb on + strandat 120.510 kb on + strandat 120.511 kb on - strandat 120.552 kb on + strandat 120.552 kb on + strandat 120.552 kb on + strandat 120.552 kb on + strandat 120.553 kb on - strandat 120.573 kb on + strandat 120.573 kb on + strandat 120.573 kb on + strandat 120.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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117,397 - +0.4
117,408 + GFF4119 0.11 -0.3
117,408 + GFF4119 0.11 -1.2
117,408 + GFF4119 0.11 -0.8
117,460 + GFF4119 0.16 -0.1
117,460 + GFF4119 0.16 -0.5
117,461 - GFF4119 0.16 -0.1
117,461 - GFF4119 0.16 +0.1
117,461 - GFF4119 0.16 +0.8
117,461 - GFF4119 0.16 +0.4
117,626 + GFF4119 0.33 -0.1
117,627 - GFF4119 0.34 -2.6
117,627 - GFF4119 0.34 -0.7
117,627 - GFF4119 0.34 -0.4
117,788 - GFF4119 0.50 +0.1
117,788 - GFF4119 0.50 -0.1
117,788 - GFF4119 0.50 -2.1
117,790 + GFF4119 0.50 -0.8
117,790 + GFF4119 0.50 +0.5
117,790 + GFF4119 0.50 -0.2
117,791 - GFF4119 0.51 -1.0
117,793 + GFF4119 0.51 +0.7
117,794 - GFF4119 0.51 +0.1
117,866 - GFF4119 0.58 +0.4
117,867 + GFF4119 0.58 +0.4
117,867 + GFF4119 0.58 -0.0
117,867 + GFF4119 0.58 -0.9
117,867 + GFF4119 0.58 +1.0
117,868 - GFF4119 0.59 -0.0
117,868 - GFF4119 0.59 +1.6
117,868 - GFF4119 0.59 +0.9
117,868 - GFF4119 0.59 +0.4
118,037 - GFF4119 0.76 +0.0
118,054 + GFF4119 0.78 +1.2
118,054 + GFF4119 0.78 +1.2
118,114 - GFF4119 0.84 +1.6
118,146 + GFF4119 0.87 -0.8
118,146 + GFF4119 0.87 -0.7
118,146 + GFF4119 0.87 -0.7
118,344 + +0.0
118,345 - -0.5
118,351 + +1.0
118,351 + +0.4
118,351 + -1.2
118,351 + -0.5
118,352 - -0.9
118,368 + -0.1
118,368 + -0.6
118,369 - -0.3
118,369 - -0.2
118,381 - +0.3
118,573 + GFF4120 0.17 -0.1
118,573 + GFF4120 0.17 -0.9
118,573 + GFF4120 0.17 +1.4
118,574 - GFF4120 0.17 +0.4
118,574 - GFF4120 0.17 -1.0
118,574 - GFF4120 0.17 +0.1
118,621 + GFF4120 0.21 +0.1
118,623 - GFF4120 0.21 -1.4
118,773 - GFF4120 0.33 +0.1
118,856 - GFF4120 0.40 +1.2
118,856 - GFF4120 0.40 +0.0
118,856 - GFF4120 0.40 +0.4
118,911 + GFF4120 0.44 +0.0
118,912 - GFF4120 0.44 +0.7
118,912 - GFF4120 0.44 +1.6
118,944 - GFF4120 0.47 +0.7
118,944 - GFF4120 0.47 +0.4
118,944 - GFF4120 0.47 +0.6
119,060 - GFF4120 0.56 +0.7
119,119 + GFF4120 0.61 -0.5
119,195 - GFF4120 0.67 +0.8
119,195 - GFF4120 0.67 -0.5
119,195 - GFF4120 0.67 -0.1
119,195 - GFF4120 0.67 -0.2
119,203 + GFF4120 0.67 +0.2
119,234 + GFF4120 0.70 -0.4
119,234 + GFF4120 0.70 +0.7
119,620 + -0.1
119,631 - -1.2
119,845 - GFF4121 0.33 -0.3
119,848 + GFF4121 0.33 +0.4
119,848 + GFF4121 0.33 +0.7
119,849 - GFF4121 0.34 -0.3
119,849 - GFF4121 0.34 -0.1
119,890 + GFF4121 0.43 +0.4
119,890 + GFF4121 0.43 -1.3
119,890 + GFF4121 0.43 -0.4
119,898 + GFF4121 0.45 -1.0
119,899 - GFF4121 0.45 -1.2
120,012 + GFF4121 0.72 +1.3
120,070 + GFF4121 0.86 -1.3
120,105 - +0.2
120,271 + +0.8
120,363 + -0.2
120,510 + +1.1
120,511 - +1.4
120,552 + -0.8
120,552 + +0.7
120,552 + +1.4
120,552 + +1.1
120,553 - -2.1
120,573 + +0.4
120,573 + +0.5
120,573 + +0.8
120,589 - +0.4

Or see this region's nucleotide sequence