Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4080 and GFF4081 are separated by 26 nucleotides GFF4081 and GFF4082 are separated by 3 nucleotides
GFF4080 - 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)), at 72,437 to 73,432
GFF4080
GFF4081 - Gluconate 5-dehydrogenase, at 73,459 to 74,220
GFF4081
GFF4082 - Sulfopropanediol 3-dehydrogenase, at 74,224 to 75,537
GFF4082
Position (kb) 73
74
75 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 72.597 kb on + strand, within GFF4080 at 72.597 kb on + strand, within GFF4080 at 72.598 kb on - strand, within GFF4080 at 72.598 kb on - strand, within GFF4080 at 72.598 kb on - strand, within GFF4080 at 72.598 kb on - strand, within GFF4080 at 72.603 kb on + strand, within GFF4080 at 72.603 kb on + strand, within GFF4080 at 72.603 kb on + strand, within GFF4080 at 72.604 kb on - strand, within GFF4080 at 72.604 kb on - strand, within GFF4080 at 72.604 kb on - strand, within GFF4080 at 72.804 kb on + strand, within GFF4080 at 72.805 kb on - strand, within GFF4080 at 72.805 kb on - strand, within GFF4080 at 72.999 kb on + strand, within GFF4080 at 72.999 kb on + strand, within GFF4080 at 72.999 kb on + strand, within GFF4080 at 73.000 kb on - strand, within GFF4080 at 73.302 kb on + strand, within GFF4080 at 73.302 kb on + strand, within GFF4080 at 73.302 kb on + strand, within GFF4080 at 73.416 kb on + strand at 73.416 kb on + strand at 73.416 kb on + strand at 73.417 kb on - strand at 73.417 kb on - strand at 73.417 kb on - strand at 73.460 kb on + strand at 73.460 kb on + strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.509 kb on - strand at 73.534 kb on + strand at 73.749 kb on - strand, within GFF4081 at 73.749 kb on - strand, within GFF4081 at 74.110 kb on - strand, within GFF4081 at 74.110 kb on - strand, within GFF4081 at 74.204 kb on + strand at 74.430 kb on - strand, within GFF4082 at 74.525 kb on + strand, within GFF4082 at 74.525 kb on + strand, within GFF4082 at 74.526 kb on - strand, within GFF4082 at 74.526 kb on - strand, within GFF4082 at 74.592 kb on - strand, within GFF4082 at 74.648 kb on + strand, within GFF4082 at 74.975 kb on + strand, within GFF4082 at 74.975 kb on + strand, within GFF4082 at 74.975 kb on + strand, within GFF4082 at 74.975 kb on + strand, within GFF4082 at 74.976 kb on - strand, within GFF4082 at 74.976 kb on - strand, within GFF4082 at 74.976 kb on - strand, within GFF4082 at 75.047 kb on + strand, within GFF4082 at 75.048 kb on - strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.057 kb on - strand, within GFF4082 at 75.057 kb on - strand, within GFF4082 at 75.057 kb on - strand, within GFF4082 at 75.143 kb on + strand, within GFF4082 at 75.143 kb on + strand, within GFF4082 at 75.143 kb on + strand, within GFF4082 at 75.143 kb on + strand, within GFF4082 at 75.144 kb on - strand, within GFF4082 at 75.144 kb on - strand, within GFF4082 at 75.182 kb on + strand, within GFF4082 at 75.182 kb on + strand, within GFF4082 at 75.183 kb on - strand, within GFF4082 at 75.183 kb on - strand, within GFF4082
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 72,597 + GFF4080 0.16 -0.0 72,597 + GFF4080 0.16 -0.3 72,598 - GFF4080 0.16 -1.4 72,598 - GFF4080 0.16 -1.1 72,598 - GFF4080 0.16 -0.3 72,598 - GFF4080 0.16 -0.6 72,603 + GFF4080 0.17 +0.1 72,603 + GFF4080 0.17 +0.0 72,603 + GFF4080 0.17 +0.7 72,604 - GFF4080 0.17 -0.7 72,604 - GFF4080 0.17 -0.1 72,604 - GFF4080 0.17 -1.6 72,804 + GFF4080 0.37 -0.1 72,805 - GFF4080 0.37 +0.3 72,805 - GFF4080 0.37 +0.2 72,999 + GFF4080 0.56 +0.0 72,999 + GFF4080 0.56 -0.7 72,999 + GFF4080 0.56 -0.4 73,000 - GFF4080 0.57 +0.3 73,302 + GFF4080 0.87 -0.0 73,302 + GFF4080 0.87 +0.6 73,302 + GFF4080 0.87 +0.0 73,416 + -0.4 73,416 + -0.3 73,416 + +0.3 73,417 - -0.1 73,417 - -0.7 73,417 - -0.5 73,460 + +0.5 73,460 + +0.1 73,508 + -0.3 73,508 + -1.1 73,508 + +0.4 73,509 - -2.7 73,534 + -1.4 73,749 - GFF4081 0.38 -0.0 73,749 - GFF4081 0.38 +0.2 74,110 - GFF4081 0.85 +0.1 74,110 - GFF4081 0.85 +0.8 74,204 + -1.2 74,430 - GFF4082 0.16 -0.6 74,525 + GFF4082 0.23 +0.6 74,525 + GFF4082 0.23 -0.4 74,526 - GFF4082 0.23 +0.8 74,526 - GFF4082 0.23 -0.1 74,592 - GFF4082 0.28 +0.8 74,648 + GFF4082 0.32 +1.0 74,975 + GFF4082 0.57 +0.1 74,975 + GFF4082 0.57 -0.5 74,975 + GFF4082 0.57 -0.8 74,975 + GFF4082 0.57 -0.3 74,976 - GFF4082 0.57 +0.7 74,976 - GFF4082 0.57 +0.7 74,976 - GFF4082 0.57 -0.4 75,047 + GFF4082 0.63 +0.6 75,048 - GFF4082 0.63 -0.4 75,056 + GFF4082 0.63 -1.4 75,056 + GFF4082 0.63 -1.6 75,056 + GFF4082 0.63 +0.3 75,056 + GFF4082 0.63 +2.0 75,056 + GFF4082 0.63 -0.2 75,057 - GFF4082 0.63 -3.8 75,057 - GFF4082 0.63 -0.8 75,057 - GFF4082 0.63 +1.0 75,143 + GFF4082 0.70 -1.5 75,143 + GFF4082 0.70 +0.5 75,143 + GFF4082 0.70 +0.2 75,143 + GFF4082 0.70 +0.4 75,144 - GFF4082 0.70 +0.3 75,144 - GFF4082 0.70 +0.7 75,182 + GFF4082 0.73 -0.6 75,182 + GFF4082 0.73 -0.6 75,183 - GFF4082 0.73 +0.4 75,183 - GFF4082 0.73 -1.2
Or see this region's nucleotide sequence