Strain Fitness in Xanthobacter sp. DMC5 around GFF4078

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4077 and GFF4078 are separated by 89 nucleotidesGFF4078 and GFF4079 are separated by 8 nucleotidesGFF4079 and GFF4080 are separated by 240 nucleotides GFF4077 - (2R)-3-sulfolactate dehydrogenase (NADP(+)), at 69,526 to 70,530 GFF4077 GFF4078 - (2R)-sulfolactate sulfo-lyase subunit beta, at 70,620 to 71,900 GFF4078 GFF4079 - Galactarate dehydratase (L-threo-forming), at 71,909 to 72,196 GFF4079 GFF4080 - 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)), at 72,437 to 73,432 GFF4080 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1at 69.685 kb on + strand, within GFF4077at 70.370 kb on - strand, within GFF4077at 70.370 kb on - strand, within GFF4077at 70.559 kb on + strandat 70.559 kb on + strandat 70.559 kb on + strandat 70.560 kb on - strandat 70.560 kb on - strandat 70.784 kb on + strand, within GFF4078at 70.785 kb on - strand, within GFF4078at 70.785 kb on - strand, within GFF4078at 70.890 kb on + strand, within GFF4078at 70.890 kb on + strand, within GFF4078at 70.890 kb on + strand, within GFF4078at 70.890 kb on + strand, within GFF4078at 70.891 kb on - strand, within GFF4078at 70.891 kb on - strand, within GFF4078at 70.891 kb on - strand, within GFF4078at 70.891 kb on - strand, within GFF4078at 70.891 kb on - strand, within GFF4078at 70.894 kb on + strand, within GFF4078at 70.951 kb on + strand, within GFF4078at 70.951 kb on + strand, within GFF4078at 70.951 kb on + strand, within GFF4078at 70.951 kb on + strand, within GFF4078at 70.951 kb on + strand, within GFF4078at 70.952 kb on - strand, within GFF4078at 70.952 kb on - strand, within GFF4078at 70.952 kb on - strand, within GFF4078at 70.954 kb on + strand, within GFF4078at 70.955 kb on - strand, within GFF4078at 71.005 kb on + strand, within GFF4078at 71.006 kb on - strand, within GFF4078at 71.147 kb on - strand, within GFF4078at 71.254 kb on + strand, within GFF4078at 71.254 kb on + strand, within GFF4078at 71.255 kb on - strand, within GFF4078at 71.281 kb on + strand, within GFF4078at 71.281 kb on + strand, within GFF4078at 71.281 kb on + strand, within GFF4078at 71.281 kb on + strand, within GFF4078at 71.281 kb on + strand, within GFF4078at 71.282 kb on - strand, within GFF4078at 71.282 kb on - strand, within GFF4078at 71.422 kb on + strand, within GFF4078at 71.422 kb on + strand, within GFF4078at 71.423 kb on - strand, within GFF4078at 71.423 kb on - strand, within GFF4078at 71.423 kb on - strand, within GFF4078at 71.519 kb on + strand, within GFF4078at 71.520 kb on - strand, within GFF4078at 71.520 kb on - strand, within GFF4078at 71.635 kb on + strand, within GFF4078at 71.635 kb on + strand, within GFF4078at 71.788 kb on + strandat 71.788 kb on + strandat 71.994 kb on + strand, within GFF4079at 72.597 kb on + strand, within GFF4080at 72.597 kb on + strand, within GFF4080at 72.598 kb on - strand, within GFF4080at 72.598 kb on - strand, within GFF4080at 72.598 kb on - strand, within GFF4080at 72.598 kb on - strand, within GFF4080at 72.603 kb on + strand, within GFF4080at 72.603 kb on + strand, within GFF4080at 72.603 kb on + strand, within GFF4080at 72.604 kb on - strand, within GFF4080at 72.604 kb on - strand, within GFF4080at 72.604 kb on - strand, within GFF4080at 72.804 kb on + strand, within GFF4080at 72.805 kb on - strand, within GFF4080at 72.805 kb on - strand, within GFF4080

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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69,685 + GFF4077 0.16 +0.9
70,370 - GFF4077 0.84 +0.0
70,370 - GFF4077 0.84 +0.0
70,559 + -0.3
70,559 + +0.1
70,559 + -0.3
70,560 - -1.7
70,560 - +0.1
70,784 + GFF4078 0.13 -0.2
70,785 - GFF4078 0.13 +1.6
70,785 - GFF4078 0.13 -0.1
70,890 + GFF4078 0.21 +1.4
70,890 + GFF4078 0.21 -0.4
70,890 + GFF4078 0.21 -1.6
70,890 + GFF4078 0.21 -0.1
70,891 - GFF4078 0.21 -0.1
70,891 - GFF4078 0.21 -1.5
70,891 - GFF4078 0.21 -0.4
70,891 - GFF4078 0.21 +0.3
70,891 - GFF4078 0.21 -0.5
70,894 + GFF4078 0.21 -1.8
70,951 + GFF4078 0.26 -0.4
70,951 + GFF4078 0.26 +0.1
70,951 + GFF4078 0.26 -1.3
70,951 + GFF4078 0.26 +1.4
70,951 + GFF4078 0.26 -0.3
70,952 - GFF4078 0.26 -1.0
70,952 - GFF4078 0.26 +0.7
70,952 - GFF4078 0.26 +0.4
70,954 + GFF4078 0.26 -0.3
70,955 - GFF4078 0.26 +1.6
71,005 + GFF4078 0.30 +0.0
71,006 - GFF4078 0.30 -0.7
71,147 - GFF4078 0.41 -0.5
71,254 + GFF4078 0.49 +0.6
71,254 + GFF4078 0.49 -2.1
71,255 - GFF4078 0.50 +1.3
71,281 + GFF4078 0.52 -0.4
71,281 + GFF4078 0.52 +0.3
71,281 + GFF4078 0.52 -0.3
71,281 + GFF4078 0.52 -0.9
71,281 + GFF4078 0.52 +0.2
71,282 - GFF4078 0.52 -1.1
71,282 - GFF4078 0.52 -1.3
71,422 + GFF4078 0.63 -0.0
71,422 + GFF4078 0.63 -0.3
71,423 - GFF4078 0.63 -1.0
71,423 - GFF4078 0.63 -0.8
71,423 - GFF4078 0.63 -0.4
71,519 + GFF4078 0.70 +1.3
71,520 - GFF4078 0.70 -0.3
71,520 - GFF4078 0.70 +1.4
71,635 + GFF4078 0.79 -0.6
71,635 + GFF4078 0.79 +0.3
71,788 + -0.5
71,788 + -0.6
71,994 + GFF4079 0.30 -0.8
72,597 + GFF4080 0.16 -0.0
72,597 + GFF4080 0.16 -0.3
72,598 - GFF4080 0.16 -1.4
72,598 - GFF4080 0.16 -1.1
72,598 - GFF4080 0.16 -0.3
72,598 - GFF4080 0.16 -0.6
72,603 + GFF4080 0.17 +0.1
72,603 + GFF4080 0.17 +0.0
72,603 + GFF4080 0.17 +0.7
72,604 - GFF4080 0.17 -0.7
72,604 - GFF4080 0.17 -0.1
72,604 - GFF4080 0.17 -1.6
72,804 + GFF4080 0.37 -0.1
72,805 - GFF4080 0.37 +0.3
72,805 - GFF4080 0.37 +0.2

Or see this region's nucleotide sequence