Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4042 and GFF4043 are separated by 30 nucleotides GFF4043 and GFF4044 overlap by 4 nucleotides GFF4044 and GFF4045 are separated by 191 nucleotides
GFF4042 - hypothetical protein, at 25,065 to 26,300
GFF4042
GFF4043 - hypothetical protein, at 26,331 to 26,876
GFF4043
GFF4044 - Alkyl hydroperoxide reductase E, at 26,873 to 27,427
GFF4044
GFF4045 - Nicotinate dehydrogenase subunit B, at 27,619 to 28,962
GFF4045
Position (kb) 26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 25.666 kb on + strand, within GFF4042 at 25.666 kb on + strand, within GFF4042 at 26.161 kb on + strand, within GFF4042 at 26.161 kb on + strand, within GFF4042 at 26.164 kb on + strand, within GFF4042 at 26.165 kb on - strand, within GFF4042 at 26.165 kb on - strand, within GFF4042 at 26.167 kb on - strand, within GFF4042 at 26.168 kb on + strand, within GFF4042 at 26.168 kb on + strand, within GFF4042 at 26.168 kb on + strand, within GFF4042 at 26.169 kb on - strand, within GFF4042 at 26.169 kb on - strand, within GFF4042 at 26.169 kb on - strand, within GFF4042 at 26.169 kb on - strand, within GFF4042 at 26.413 kb on + strand, within GFF4043 at 26.414 kb on - strand, within GFF4043 at 26.500 kb on + strand, within GFF4043 at 26.500 kb on + strand, within GFF4043 at 26.501 kb on - strand, within GFF4043 at 26.501 kb on - strand, within GFF4043 at 26.557 kb on + strand, within GFF4043 at 26.557 kb on + strand, within GFF4043 at 26.557 kb on + strand, within GFF4043 at 26.558 kb on - strand, within GFF4043 at 26.599 kb on + strand, within GFF4043 at 26.600 kb on - strand, within GFF4043 at 26.600 kb on - strand, within GFF4043 at 26.761 kb on + strand, within GFF4043 at 26.788 kb on + strand, within GFF4043 at 26.789 kb on - strand, within GFF4043 at 26.797 kb on + strand, within GFF4043 at 26.797 kb on + strand, within GFF4043 at 26.889 kb on + strand at 26.889 kb on + strand at 26.890 kb on - strand at 26.890 kb on - strand at 26.890 kb on - strand at 27.000 kb on + strand, within GFF4044 at 27.000 kb on + strand, within GFF4044 at 27.001 kb on - strand, within GFF4044 at 27.001 kb on - strand, within GFF4044 at 27.001 kb on - strand, within GFF4044 at 27.073 kb on - strand, within GFF4044 at 27.081 kb on + strand, within GFF4044 at 27.082 kb on - strand, within GFF4044 at 27.237 kb on + strand, within GFF4044 at 27.237 kb on + strand, within GFF4044 at 27.238 kb on - strand, within GFF4044 at 27.238 kb on - strand, within GFF4044 at 27.282 kb on + strand, within GFF4044 at 27.282 kb on + strand, within GFF4044 at 27.283 kb on - strand, within GFF4044 at 27.524 kb on + strand at 27.524 kb on + strand at 27.525 kb on - strand at 27.549 kb on + strand at 27.682 kb on + strand at 27.682 kb on + strand at 27.701 kb on + strand at 27.862 kb on + strand, within GFF4045 at 27.863 kb on - strand, within GFF4045 at 27.863 kb on - strand, within GFF4045
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 25,666 + GFF4042 0.49 -1.0 25,666 + GFF4042 0.49 -0.1 26,161 + GFF4042 0.89 +0.7 26,161 + GFF4042 0.89 -0.4 26,164 + GFF4042 0.89 +0.3 26,165 - GFF4042 0.89 -0.7 26,165 - GFF4042 0.89 +0.6 26,167 - GFF4042 0.89 +0.6 26,168 + GFF4042 0.89 -0.1 26,168 + GFF4042 0.89 -2.6 26,168 + GFF4042 0.89 -0.6 26,169 - GFF4042 0.89 -0.2 26,169 - GFF4042 0.89 -0.9 26,169 - GFF4042 0.89 -0.2 26,169 - GFF4042 0.89 +0.7 26,413 + GFF4043 0.15 +0.9 26,414 - GFF4043 0.15 -0.2 26,500 + GFF4043 0.31 +0.3 26,500 + GFF4043 0.31 -0.2 26,501 - GFF4043 0.31 +0.3 26,501 - GFF4043 0.31 -0.3 26,557 + GFF4043 0.41 -1.2 26,557 + GFF4043 0.41 +0.1 26,557 + GFF4043 0.41 +0.8 26,558 - GFF4043 0.42 +1.6 26,599 + GFF4043 0.49 -2.0 26,600 - GFF4043 0.49 -0.2 26,600 - GFF4043 0.49 -0.2 26,761 + GFF4043 0.79 -1.7 26,788 + GFF4043 0.84 +1.3 26,789 - GFF4043 0.84 +0.5 26,797 + GFF4043 0.85 +0.7 26,797 + GFF4043 0.85 -0.3 26,889 + +0.0 26,889 + +1.5 26,890 - -0.4 26,890 - -0.0 26,890 - -0.1 27,000 + GFF4044 0.23 -0.5 27,000 + GFF4044 0.23 -0.1 27,001 - GFF4044 0.23 +0.3 27,001 - GFF4044 0.23 +0.1 27,001 - GFF4044 0.23 +1.2 27,073 - GFF4044 0.36 +0.7 27,081 + GFF4044 0.37 -1.1 27,082 - GFF4044 0.38 -2.1 27,237 + GFF4044 0.66 +0.0 27,237 + GFF4044 0.66 -0.8 27,238 - GFF4044 0.66 -1.4 27,238 - GFF4044 0.66 +0.3 27,282 + GFF4044 0.74 -0.9 27,282 + GFF4044 0.74 -0.6 27,283 - GFF4044 0.74 -0.9 27,524 + -0.3 27,524 + -1.1 27,525 - -0.1 27,549 + +0.1 27,682 + -0.1 27,682 + -0.6 27,701 + +0.7 27,862 + GFF4045 0.18 +0.4 27,863 - GFF4045 0.18 -0.4 27,863 - GFF4045 0.18 +1.3
Or see this region's nucleotide sequence