Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3938 and GFF3939 overlap by 4 nucleotides GFF3939 and GFF3940 are separated by 6 nucleotides GFF3940 and GFF3941 are separated by 67 nucleotides GFF3941 and GFF3942 are separated by 8 nucleotides
GFF3938 - Membrane-bound lytic murein transglycosylase A, at 306,254 to 307,393
GFF3938
GFF3939 - hypothetical protein, at 307,390 to 307,986
GFF3939
GFF3940 - hypothetical protein, at 307,993 to 308,694
GFF3940
GFF3941 - hypothetical protein, at 308,762 to 309,223
GFF3941
GFF3942 - Primosomal protein N', at 309,232 to 311,412
GFF3942
Position (kb) 307
308
309 Strain fitness (log2 ratio) -1
0
1
2 at 307.101 kb on + strand, within GFF3938 at 307.101 kb on + strand, within GFF3938 at 307.151 kb on + strand, within GFF3938 at 307.152 kb on - strand, within GFF3938 at 307.152 kb on - strand, within GFF3938 at 307.960 kb on + strand at 307.961 kb on - strand at 307.961 kb on - strand at 308.071 kb on + strand, within GFF3940 at 308.514 kb on - strand, within GFF3940 at 308.912 kb on + strand, within GFF3941 at 308.913 kb on - strand, within GFF3941 at 308.937 kb on + strand, within GFF3941 at 308.937 kb on + strand, within GFF3941 at 308.937 kb on + strand, within GFF3941 at 309.069 kb on + strand, within GFF3941 at 309.070 kb on - strand, within GFF3941 at 309.141 kb on + strand, within GFF3941
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 307,101 + GFF3938 0.74 +0.3 307,101 + GFF3938 0.74 -0.2 307,151 + GFF3938 0.79 +2.4 307,152 - GFF3938 0.79 +0.3 307,152 - GFF3938 0.79 -0.4 307,960 + +0.7 307,961 - +1.2 307,961 - -0.8 308,071 + GFF3940 0.11 +0.0 308,514 - GFF3940 0.74 -0.5 308,912 + GFF3941 0.32 +0.8 308,913 - GFF3941 0.33 -0.1 308,937 + GFF3941 0.38 -0.0 308,937 + GFF3941 0.38 -0.0 308,937 + GFF3941 0.38 -0.0 309,069 + GFF3941 0.66 +0.6 309,070 - GFF3941 0.67 +0.0 309,141 + GFF3941 0.82 +0.4
Or see this region's nucleotide sequence