Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3895 and GFF3896 are separated by 154 nucleotides GFF3896 and GFF3897 are separated by 232 nucleotides GFF3897 and GFF3898 are separated by 4 nucleotides GFF3898 and GFF3899 are separated by 84 nucleotides
GFF3895 - hypothetical protein, at 261,412 to 261,765
GFF3895
GFF3896 - hypothetical protein, at 261,920 to 262,144
GFF3896
GFF3897 - hypothetical protein, at 262,377 to 263,624
GFF3897
GFF3898 - hypothetical protein, at 263,629 to 264,381
GFF3898
GFF3899 - Succinyl-CoA:coenzyme A transferase, at 264,466 to 265,992
GFF3899
Position (kb) 262
263
264 Strain fitness (log2 ratio) -1
0
1 at 261.784 kb on + strand at 261.794 kb on + strand at 263.128 kb on - strand, within GFF3897 at 263.128 kb on - strand, within GFF3897 at 263.189 kb on - strand, within GFF3897 at 263.332 kb on - strand, within GFF3897 at 263.376 kb on + strand, within GFF3897 at 263.560 kb on - strand at 263.560 kb on - strand at 264.179 kb on + strand, within GFF3898 at 264.179 kb on + strand, within GFF3898 at 264.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 261,784 + +0.7 261,794 + +0.8 263,128 - GFF3897 0.60 -0.8 263,128 - GFF3897 0.60 +0.7 263,189 - GFF3897 0.65 -0.4 263,332 - GFF3897 0.77 +0.1 263,376 + GFF3897 0.80 +0.6 263,560 - +0.8 263,560 - +0.5 264,179 + GFF3898 0.73 -1.1 264,179 + GFF3898 0.73 +0.4 264,429 - +0.6
Or see this region's nucleotide sequence