Strain Fitness in Xanthobacter sp. DMC5 around GFF3785

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3784 and GFF3785 are separated by 75 nucleotidesGFF3785 and GFF3786 are separated by 187 nucleotides GFF3784 - Oxygen-independent coproporphyrinogen III oxidase, at 134,256 to 135,647 GFF3784 GFF3785 - Beta-barrel assembly-enhancing protease, at 135,723 to 139,271 GFF3785 GFF3786 - hypothetical protein, at 139,459 to 140,475 GFF3786 Position (kb) 135 136 137 138 139 140Strain fitness (log2 ratio) -2 -1 0 1 2at 135.004 kb on + strand, within GFF3784at 135.004 kb on + strand, within GFF3784at 135.004 kb on + strand, within GFF3784at 135.005 kb on - strand, within GFF3784at 135.201 kb on + strand, within GFF3784at 135.388 kb on + strand, within GFF3784at 135.389 kb on - strand, within GFF3784at 135.439 kb on + strand, within GFF3784at 135.475 kb on + strand, within GFF3784at 135.476 kb on - strand, within GFF3784at 135.523 kb on + strandat 135.524 kb on - strandat 135.618 kb on - strandat 135.728 kb on - strandat 135.791 kb on - strandat 135.791 kb on - strandat 135.829 kb on + strandat 135.830 kb on - strandat 135.850 kb on + strandat 135.898 kb on + strandat 135.931 kb on + strandat 135.931 kb on + strandat 135.932 kb on - strandat 135.932 kb on - strandat 135.932 kb on - strandat 135.932 kb on - strandat 136.036 kb on + strandat 136.036 kb on + strandat 136.037 kb on - strandat 136.045 kb on + strandat 136.046 kb on - strandat 136.046 kb on - strandat 136.046 kb on - strandat 136.108 kb on + strand, within GFF3785at 136.108 kb on + strand, within GFF3785at 136.109 kb on - strand, within GFF3785at 136.162 kb on + strand, within GFF3785at 136.162 kb on + strand, within GFF3785at 136.162 kb on + strand, within GFF3785at 136.162 kb on + strand, within GFF3785at 136.179 kb on + strand, within GFF3785at 136.179 kb on + strand, within GFF3785at 136.180 kb on - strand, within GFF3785at 136.180 kb on - strand, within GFF3785at 136.264 kb on + strand, within GFF3785at 136.265 kb on - strand, within GFF3785at 136.265 kb on - strand, within GFF3785at 136.265 kb on - strand, within GFF3785at 136.399 kb on + strand, within GFF3785at 136.400 kb on - strand, within GFF3785at 136.400 kb on - strand, within GFF3785at 136.400 kb on - strand, within GFF3785at 136.400 kb on - strand, within GFF3785at 136.429 kb on + strand, within GFF3785at 136.429 kb on + strand, within GFF3785at 136.430 kb on - strand, within GFF3785at 136.444 kb on + strand, within GFF3785at 136.444 kb on + strand, within GFF3785at 136.444 kb on + strand, within GFF3785at 136.444 kb on + strand, within GFF3785at 136.445 kb on - strand, within GFF3785at 136.445 kb on - strand, within GFF3785at 136.445 kb on - strand, within GFF3785at 136.445 kb on - strand, within GFF3785at 136.499 kb on - strand, within GFF3785at 136.499 kb on - strand, within GFF3785at 136.555 kb on + strand, within GFF3785at 136.579 kb on + strand, within GFF3785at 136.579 kb on + strand, within GFF3785at 136.609 kb on - strand, within GFF3785at 136.658 kb on - strand, within GFF3785at 136.663 kb on + strand, within GFF3785at 136.663 kb on + strand, within GFF3785at 136.664 kb on - strand, within GFF3785at 136.744 kb on + strand, within GFF3785at 136.744 kb on + strand, within GFF3785at 136.936 kb on + strand, within GFF3785at 136.936 kb on + strand, within GFF3785at 136.936 kb on + strand, within GFF3785at 136.936 kb on + strand, within GFF3785at 136.936 kb on + strand, within GFF3785at 136.936 kb on + strand, within GFF3785at 136.937 kb on - strand, within GFF3785at 136.937 kb on - strand, within GFF3785at 137.078 kb on - strand, within GFF3785at 137.078 kb on - strand, within GFF3785at 137.242 kb on + strand, within GFF3785at 137.303 kb on - strand, within GFF3785at 137.428 kb on + strand, within GFF3785at 137.429 kb on - strand, within GFF3785at 137.429 kb on - strand, within GFF3785at 137.623 kb on + strand, within GFF3785at 137.624 kb on - strand, within GFF3785at 137.624 kb on - strand, within GFF3785at 137.673 kb on + strand, within GFF3785at 138.043 kb on + strand, within GFF3785at 138.043 kb on + strand, within GFF3785at 138.043 kb on + strand, within GFF3785at 138.043 kb on + strand, within GFF3785at 138.044 kb on - strand, within GFF3785at 138.044 kb on - strand, within GFF3785at 138.044 kb on - strand, within GFF3785at 138.044 kb on - strand, within GFF3785at 138.044 kb on - strand, within GFF3785at 138.201 kb on - strand, within GFF3785at 138.201 kb on - strand, within GFF3785at 138.201 kb on - strand, within GFF3785at 138.201 kb on - strand, within GFF3785at 138.259 kb on + strand, within GFF3785at 138.259 kb on + strand, within GFF3785at 138.259 kb on + strand, within GFF3785at 138.259 kb on + strand, within GFF3785at 138.260 kb on - strand, within GFF3785at 138.260 kb on - strand, within GFF3785at 138.260 kb on - strand, within GFF3785at 138.260 kb on - strand, within GFF3785at 138.556 kb on + strand, within GFF3785at 138.556 kb on + strand, within GFF3785at 138.557 kb on - strand, within GFF3785at 138.658 kb on + strand, within GFF3785at 138.677 kb on - strand, within GFF3785at 138.964 kb on + strandat 138.964 kb on + strandat 138.964 kb on + strandat 138.964 kb on + strandat 138.983 kb on - strandat 139.007 kb on - strandat 139.195 kb on - strandat 139.427 kb on + strandat 139.461 kb on - strandat 139.461 kb on - strandat 139.625 kb on + strand, within GFF3786at 139.625 kb on + strand, within GFF3786at 139.625 kb on + strand, within GFF3786at 139.625 kb on + strand, within GFF3786at 139.625 kb on + strand, within GFF3786at 139.626 kb on - strand, within GFF3786at 139.626 kb on - strand, within GFF3786at 139.626 kb on - strand, within GFF3786at 139.626 kb on - strand, within GFF3786at 139.724 kb on + strand, within GFF3786at 139.725 kb on - strand, within GFF3786at 139.725 kb on - strand, within GFF3786at 139.815 kb on + strand, within GFF3786at 139.815 kb on + strand, within GFF3786at 139.816 kb on - strand, within GFF3786at 139.816 kb on - strand, within GFF3786at 139.818 kb on - strand, within GFF3786at 139.818 kb on - strand, within GFF3786at 140.010 kb on - strand, within GFF3786at 140.010 kb on - strand, within GFF3786at 140.021 kb on + strand, within GFF3786at 140.120 kb on + strand, within GFF3786at 140.121 kb on - strand, within GFF3786at 140.174 kb on + strand, within GFF3786at 140.175 kb on - strand, within GFF3786

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
135,004 + GFF3784 0.54 +0.2
135,004 + GFF3784 0.54 +0.4
135,004 + GFF3784 0.54 -0.4
135,005 - GFF3784 0.54 +0.1
135,201 + GFF3784 0.68 +0.2
135,388 + GFF3784 0.81 +1.5
135,389 - GFF3784 0.81 +0.3
135,439 + GFF3784 0.85 -0.2
135,475 + GFF3784 0.88 -1.1
135,476 - GFF3784 0.88 -0.5
135,523 + +0.0
135,524 - -1.3
135,618 - +1.4
135,728 - +0.5
135,791 - -0.9
135,791 - -0.3
135,829 + -0.5
135,830 - -0.9
135,850 + -0.4
135,898 + -0.4
135,931 + +0.3
135,931 + -0.7
135,932 - +1.0
135,932 - +0.0
135,932 - -0.7
135,932 - -1.3
136,036 + -0.2
136,036 + -0.3
136,037 - -0.6
136,045 + +0.2
136,046 - -0.4
136,046 - -1.2
136,046 - +0.2
136,108 + GFF3785 0.11 -1.0
136,108 + GFF3785 0.11 +0.3
136,109 - GFF3785 0.11 +0.3
136,162 + GFF3785 0.12 -0.6
136,162 + GFF3785 0.12 +0.1
136,162 + GFF3785 0.12 +0.1
136,162 + GFF3785 0.12 +0.1
136,179 + GFF3785 0.13 +0.8
136,179 + GFF3785 0.13 -0.2
136,180 - GFF3785 0.13 +0.4
136,180 - GFF3785 0.13 +0.2
136,264 + GFF3785 0.15 -0.2
136,265 - GFF3785 0.15 +0.0
136,265 - GFF3785 0.15 -0.3
136,265 - GFF3785 0.15 +0.5
136,399 + GFF3785 0.19 +0.5
136,400 - GFF3785 0.19 -2.4
136,400 - GFF3785 0.19 +0.1
136,400 - GFF3785 0.19 +0.5
136,400 - GFF3785 0.19 -1.0
136,429 + GFF3785 0.20 +1.2
136,429 + GFF3785 0.20 -0.9
136,430 - GFF3785 0.20 +0.2
136,444 + GFF3785 0.20 -1.9
136,444 + GFF3785 0.20 +0.4
136,444 + GFF3785 0.20 -0.7
136,444 + GFF3785 0.20 +1.3
136,445 - GFF3785 0.20 -0.5
136,445 - GFF3785 0.20 -0.5
136,445 - GFF3785 0.20 -0.4
136,445 - GFF3785 0.20 -0.2
136,499 - GFF3785 0.22 +0.4
136,499 - GFF3785 0.22 +0.4
136,555 + GFF3785 0.23 -1.4
136,579 + GFF3785 0.24 +1.2
136,579 + GFF3785 0.24 -0.9
136,609 - GFF3785 0.25 -1.1
136,658 - GFF3785 0.26 -0.8
136,663 + GFF3785 0.26 -1.3
136,663 + GFF3785 0.26 +0.2
136,664 - GFF3785 0.27 +1.1
136,744 + GFF3785 0.29 +0.2
136,744 + GFF3785 0.29 +0.2
136,936 + GFF3785 0.34 -0.3
136,936 + GFF3785 0.34 -0.1
136,936 + GFF3785 0.34 -0.7
136,936 + GFF3785 0.34 -0.8
136,936 + GFF3785 0.34 -0.5
136,936 + GFF3785 0.34 +0.2
136,937 - GFF3785 0.34 -0.3
136,937 - GFF3785 0.34 -0.1
137,078 - GFF3785 0.38 -0.4
137,078 - GFF3785 0.38 -0.9
137,242 + GFF3785 0.43 -1.0
137,303 - GFF3785 0.45 -0.6
137,428 + GFF3785 0.48 -0.0
137,429 - GFF3785 0.48 +0.3
137,429 - GFF3785 0.48 +2.5
137,623 + GFF3785 0.54 +0.6
137,624 - GFF3785 0.54 -0.8
137,624 - GFF3785 0.54 +1.3
137,673 + GFF3785 0.55 -0.4
138,043 + GFF3785 0.65 -0.2
138,043 + GFF3785 0.65 -0.0
138,043 + GFF3785 0.65 -0.2
138,043 + GFF3785 0.65 +0.6
138,044 - GFF3785 0.65 -0.5
138,044 - GFF3785 0.65 -0.2
138,044 - GFF3785 0.65 +0.5
138,044 - GFF3785 0.65 -0.5
138,044 - GFF3785 0.65 +0.1
138,201 - GFF3785 0.70 -0.7
138,201 - GFF3785 0.70 -0.3
138,201 - GFF3785 0.70 +0.6
138,201 - GFF3785 0.70 -0.1
138,259 + GFF3785 0.71 +1.0
138,259 + GFF3785 0.71 -1.2
138,259 + GFF3785 0.71 +0.1
138,259 + GFF3785 0.71 +0.2
138,260 - GFF3785 0.71 +1.6
138,260 - GFF3785 0.71 -0.4
138,260 - GFF3785 0.71 +0.8
138,260 - GFF3785 0.71 +0.1
138,556 + GFF3785 0.80 -0.6
138,556 + GFF3785 0.80 -0.5
138,557 - GFF3785 0.80 +0.6
138,658 + GFF3785 0.83 -0.7
138,677 - GFF3785 0.83 +0.7
138,964 + -0.2
138,964 + -0.4
138,964 + -1.5
138,964 + -0.3
138,983 - -0.3
139,007 - -0.3
139,195 - -0.4
139,427 + -0.4
139,461 - -0.2
139,461 - +0.7
139,625 + GFF3786 0.16 +0.6
139,625 + GFF3786 0.16 -0.7
139,625 + GFF3786 0.16 +0.5
139,625 + GFF3786 0.16 +0.8
139,625 + GFF3786 0.16 -0.2
139,626 - GFF3786 0.16 -1.0
139,626 - GFF3786 0.16 +0.5
139,626 - GFF3786 0.16 +1.2
139,626 - GFF3786 0.16 -0.1
139,724 + GFF3786 0.26 +0.2
139,725 - GFF3786 0.26 -2.4
139,725 - GFF3786 0.26 +0.2
139,815 + GFF3786 0.35 -0.1
139,815 + GFF3786 0.35 +0.7
139,816 - GFF3786 0.35 +1.2
139,816 - GFF3786 0.35 +0.4
139,818 - GFF3786 0.35 +0.8
139,818 - GFF3786 0.35 -0.3
140,010 - GFF3786 0.54 -1.8
140,010 - GFF3786 0.54 +0.7
140,021 + GFF3786 0.55 -2.2
140,120 + GFF3786 0.65 -0.2
140,121 - GFF3786 0.65 +0.0
140,174 + GFF3786 0.70 -0.4
140,175 - GFF3786 0.70 +0.2

Or see this region's nucleotide sequence