Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3776 and GFF3777 are separated by 62 nucleotides GFF3777 and GFF3778 are separated by 153 nucleotides
GFF3776 - hypothetical protein, at 121,165 to 123,810
GFF3776
GFF3777 - hypothetical protein, at 123,873 to 126,059
GFF3777
GFF3778 - putative signaling protein, at 126,213 to 127,544
GFF3778
Position (kb) 123
124
125
126
127 Strain fitness (log2 ratio) -2
-1
0
1 at 122.891 kb on + strand, within GFF3776 at 122.891 kb on + strand, within GFF3776 at 122.892 kb on - strand, within GFF3776 at 123.155 kb on + strand, within GFF3776 at 123.155 kb on + strand, within GFF3776 at 123.156 kb on - strand, within GFF3776 at 123.662 kb on + strand at 123.662 kb on + strand at 123.662 kb on + strand at 123.662 kb on + strand at 123.662 kb on + strand at 123.662 kb on + strand at 123.663 kb on - strand at 123.663 kb on - strand at 123.663 kb on - strand at 123.734 kb on + strand at 123.735 kb on - strand at 123.931 kb on + strand at 123.940 kb on + strand at 124.105 kb on + strand, within GFF3777 at 124.266 kb on + strand, within GFF3777 at 124.267 kb on - strand, within GFF3777 at 124.277 kb on - strand, within GFF3777 at 124.511 kb on - strand, within GFF3777 at 124.511 kb on - strand, within GFF3777 at 124.778 kb on - strand, within GFF3777 at 124.802 kb on - strand, within GFF3777 at 124.802 kb on - strand, within GFF3777 at 124.802 kb on - strand, within GFF3777 at 124.802 kb on - strand, within GFF3777 at 124.977 kb on - strand, within GFF3777 at 125.347 kb on + strand, within GFF3777 at 125.347 kb on + strand, within GFF3777 at 125.348 kb on - strand, within GFF3777 at 125.348 kb on - strand, within GFF3777 at 125.348 kb on - strand, within GFF3777 at 125.509 kb on - strand, within GFF3777 at 125.591 kb on - strand, within GFF3777 at 126.164 kb on + strand at 126.165 kb on - strand at 126.239 kb on + strand at 126.240 kb on - strand at 126.241 kb on + strand at 126.241 kb on + strand at 126.242 kb on - strand at 126.280 kb on + strand at 126.280 kb on + strand at 126.488 kb on - strand, within GFF3778 at 126.488 kb on - strand, within GFF3778 at 126.503 kb on - strand, within GFF3778 at 126.594 kb on + strand, within GFF3778 at 126.936 kb on + strand, within GFF3778 at 127.010 kb on - strand, within GFF3778
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 122,891 + GFF3776 0.65 -0.4 122,891 + GFF3776 0.65 -0.2 122,892 - GFF3776 0.65 -0.4 123,155 + GFF3776 0.75 +0.3 123,155 + GFF3776 0.75 +0.5 123,156 - GFF3776 0.75 +1.0 123,662 + +0.3 123,662 + -0.3 123,662 + -0.8 123,662 + -0.3 123,662 + +0.0 123,662 + +0.1 123,663 - +0.5 123,663 - -0.1 123,663 - +0.3 123,734 + -1.2 123,735 - +1.0 123,931 + +1.7 123,940 + -0.1 124,105 + GFF3777 0.11 +0.3 124,266 + GFF3777 0.18 +0.6 124,267 - GFF3777 0.18 -0.6 124,277 - GFF3777 0.18 -0.8 124,511 - GFF3777 0.29 -0.9 124,511 - GFF3777 0.29 -1.0 124,778 - GFF3777 0.41 +0.6 124,802 - GFF3777 0.42 +0.4 124,802 - GFF3777 0.42 +1.0 124,802 - GFF3777 0.42 -0.2 124,802 - GFF3777 0.42 -0.2 124,977 - GFF3777 0.50 -2.1 125,347 + GFF3777 0.67 +0.6 125,347 + GFF3777 0.67 -2.5 125,348 - GFF3777 0.67 -0.3 125,348 - GFF3777 0.67 +1.1 125,348 - GFF3777 0.67 -0.0 125,509 - GFF3777 0.75 -0.8 125,591 - GFF3777 0.79 +1.1 126,164 + -0.1 126,165 - +0.3 126,239 + -0.2 126,240 - -0.2 126,241 + -0.7 126,241 + +0.8 126,242 - -0.3 126,280 + +0.8 126,280 + +0.5 126,488 - GFF3778 0.21 +0.5 126,488 - GFF3778 0.21 +0.2 126,503 - GFF3778 0.22 +1.1 126,594 + GFF3778 0.29 -0.4 126,936 + GFF3778 0.54 -0.1 127,010 - GFF3778 0.60 -0.6
Or see this region's nucleotide sequence