Strain Fitness in Xanthobacter sp. DMC5 around GFF3667

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3666 and GFF3667 are separated by 6 nucleotidesGFF3667 and GFF3668 are separated by 16 nucleotides GFF3666 - hypothetical protein, at 5,065 to 5,991 GFF3666 GFF3667 - hypothetical protein, at 5,998 to 6,417 GFF3667 GFF3668 - hypothetical protein, at 6,434 to 8,032 GFF3668 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 5.009 kb on + strandat 5.170 kb on + strand, within GFF3666at 5.170 kb on + strand, within GFF3666at 5.170 kb on + strand, within GFF3666at 5.171 kb on - strand, within GFF3666at 5.171 kb on - strand, within GFF3666at 5.171 kb on - strand, within GFF3666at 5.368 kb on + strand, within GFF3666at 5.368 kb on + strand, within GFF3666at 5.545 kb on + strand, within GFF3666at 5.545 kb on + strand, within GFF3666at 5.546 kb on - strand, within GFF3666at 5.546 kb on - strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.745 kb on + strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.990 kb on - strandat 5.990 kb on - strandat 6.317 kb on + strand, within GFF3667at 6.317 kb on + strand, within GFF3667at 6.317 kb on + strand, within GFF3667at 6.317 kb on + strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.674 kb on + strand, within GFF3668at 6.762 kb on - strand, within GFF3668at 6.762 kb on - strand, within GFF3668at 6.768 kb on - strand, within GFF3668at 6.774 kb on + strand, within GFF3668at 6.839 kb on - strand, within GFF3668at 6.846 kb on + strand, within GFF3668at 6.846 kb on + strand, within GFF3668at 6.846 kb on + strand, within GFF3668at 6.847 kb on - strand, within GFF3668at 6.847 kb on - strand, within GFF3668at 6.851 kb on - strand, within GFF3668at 6.885 kb on + strand, within GFF3668at 6.886 kb on - strand, within GFF3668at 6.904 kb on + strand, within GFF3668at 6.904 kb on + strand, within GFF3668at 6.950 kb on + strand, within GFF3668at 6.950 kb on + strand, within GFF3668at 6.950 kb on + strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.953 kb on - strand, within GFF3668at 6.996 kb on + strand, within GFF3668at 7.034 kb on + strand, within GFF3668at 7.035 kb on - strand, within GFF3668at 7.035 kb on - strand, within GFF3668at 7.042 kb on + strand, within GFF3668at 7.042 kb on + strand, within GFF3668at 7.042 kb on + strand, within GFF3668at 7.043 kb on - strand, within GFF3668at 7.078 kb on - strand, within GFF3668at 7.078 kb on - strand, within GFF3668at 7.096 kb on + strand, within GFF3668at 7.096 kb on + strand, within GFF3668at 7.125 kb on + strand, within GFF3668at 7.125 kb on + strand, within GFF3668at 7.125 kb on + strand, within GFF3668at 7.126 kb on - strand, within GFF3668at 7.126 kb on - strand, within GFF3668at 7.126 kb on - strand, within GFF3668at 7.159 kb on + strand, within GFF3668at 7.159 kb on + strand, within GFF3668at 7.159 kb on + strand, within GFF3668at 7.160 kb on - strand, within GFF3668at 7.160 kb on - strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.163 kb on + strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.164 kb on - strand, within GFF3668at 7.268 kb on + strand, within GFF3668at 7.268 kb on + strand, within GFF3668at 7.408 kb on + strand, within GFF3668at 7.409 kb on - strand, within GFF3668

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
5,009 + -1.0
5,170 + GFF3666 0.11 +0.0
5,170 + GFF3666 0.11 -0.3
5,170 + GFF3666 0.11 +1.2
5,171 - GFF3666 0.11 -0.2
5,171 - GFF3666 0.11 +1.7
5,171 - GFF3666 0.11 +0.2
5,368 + GFF3666 0.33 -0.8
5,368 + GFF3666 0.33 +0.7
5,545 + GFF3666 0.52 +1.5
5,545 + GFF3666 0.52 -1.3
5,546 - GFF3666 0.52 -0.5
5,546 - GFF3666 0.52 +0.1
5,584 + GFF3666 0.56 -0.7
5,584 + GFF3666 0.56 -1.0
5,584 + GFF3666 0.56 +1.5
5,584 + GFF3666 0.56 -1.8
5,584 + GFF3666 0.56 +0.7
5,584 + GFF3666 0.56 -0.1
5,585 - GFF3666 0.56 +0.1
5,585 - GFF3666 0.56 +0.5
5,585 - GFF3666 0.56 +0.5
5,585 - GFF3666 0.56 -0.3
5,585 - GFF3666 0.56 +0.8
5,745 + GFF3666 0.73 -0.0
5,746 - GFF3666 0.73 +0.2
5,746 - GFF3666 0.73 +0.7
5,746 - GFF3666 0.73 -0.4
5,746 - GFF3666 0.73 +0.6
5,990 - -0.3
5,990 - -1.5
6,317 + GFF3667 0.76 -0.5
6,317 + GFF3667 0.76 +0.8
6,317 + GFF3667 0.76 +0.3
6,317 + GFF3667 0.76 -2.0
6,318 - GFF3667 0.76 -0.2
6,318 - GFF3667 0.76 +1.8
6,318 - GFF3667 0.76 +0.2
6,318 - GFF3667 0.76 -0.1
6,674 + GFF3668 0.15 +0.8
6,762 - GFF3668 0.21 +0.7
6,762 - GFF3668 0.21 -1.5
6,768 - GFF3668 0.21 -1.0
6,774 + GFF3668 0.21 +0.5
6,839 - GFF3668 0.25 -1.9
6,846 + GFF3668 0.26 +0.4
6,846 + GFF3668 0.26 -1.8
6,846 + GFF3668 0.26 +0.9
6,847 - GFF3668 0.26 -0.4
6,847 - GFF3668 0.26 +0.1
6,851 - GFF3668 0.26 +0.9
6,885 + GFF3668 0.28 -0.3
6,886 - GFF3668 0.28 -0.1
6,904 + GFF3668 0.29 +0.8
6,904 + GFF3668 0.29 +0.1
6,950 + GFF3668 0.32 +0.2
6,950 + GFF3668 0.32 +0.0
6,950 + GFF3668 0.32 -1.3
6,951 - GFF3668 0.32 -1.0
6,951 - GFF3668 0.32 +0.1
6,951 - GFF3668 0.32 +0.4
6,951 - GFF3668 0.32 -0.5
6,953 - GFF3668 0.32 +0.9
6,996 + GFF3668 0.35 +1.3
7,034 + GFF3668 0.38 +0.1
7,035 - GFF3668 0.38 -0.1
7,035 - GFF3668 0.38 +0.0
7,042 + GFF3668 0.38 +0.5
7,042 + GFF3668 0.38 +0.2
7,042 + GFF3668 0.38 +0.3
7,043 - GFF3668 0.38 +0.2
7,078 - GFF3668 0.40 +2.5
7,078 - GFF3668 0.40 -1.7
7,096 + GFF3668 0.41 -1.1
7,096 + GFF3668 0.41 +0.4
7,125 + GFF3668 0.43 -0.7
7,125 + GFF3668 0.43 +0.6
7,125 + GFF3668 0.43 -1.4
7,126 - GFF3668 0.43 -0.3
7,126 - GFF3668 0.43 -1.1
7,126 - GFF3668 0.43 -0.3
7,159 + GFF3668 0.45 +0.3
7,159 + GFF3668 0.45 +0.7
7,159 + GFF3668 0.45 -0.1
7,160 - GFF3668 0.45 +1.0
7,160 - GFF3668 0.45 -0.5
7,163 + GFF3668 0.46 +0.1
7,163 + GFF3668 0.46 -0.1
7,163 + GFF3668 0.46 +1.0
7,163 + GFF3668 0.46 -1.1
7,163 + GFF3668 0.46 +0.9
7,163 + GFF3668 0.46 +0.0
7,164 - GFF3668 0.46 -0.3
7,164 - GFF3668 0.46 -0.2
7,164 - GFF3668 0.46 +1.2
7,164 - GFF3668 0.46 +1.8
7,164 - GFF3668 0.46 -0.4
7,268 + GFF3668 0.52 -0.1
7,268 + GFF3668 0.52 -0.8
7,408 + GFF3668 0.61 +0.1
7,409 - GFF3668 0.61 -0.7

Or see this region's nucleotide sequence