Strain Fitness in Xanthobacter sp. DMC5 around GFF3576

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3575 and GFF3576 are separated by 560 nucleotidesGFF3576 and GFF3577 are separated by 28 nucleotidesGFF3577 and GFF3578 are separated by 77 nucleotides GFF3575 - hypothetical protein, at 437,930 to 438,508 GFF3575 GFF3576 - DNA-3-methyladenine glycosylase 1, at 439,069 to 439,680 GFF3576 GFF3577 - tRNA-modifying protein YgfZ, at 439,709 to 440,587 GFF3577 GFF3578 - Allantoinase, at 440,665 to 442,005 GFF3578 Position (kb) 439 440Strain fitness (log2 ratio) -1 0 1at 439.137 kb on - strand, within GFF3576at 439.320 kb on - strand, within GFF3576at 439.320 kb on - strand, within GFF3576at 439.413 kb on - strand, within GFF3576at 439.413 kb on - strand, within GFF3576at 439.586 kb on + strand, within GFF3576at 439.586 kb on + strand, within GFF3576at 439.587 kb on - strand, within GFF3576

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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439,137 - GFF3576 0.11 +0.0
439,320 - GFF3576 0.41 +0.2
439,320 - GFF3576 0.41 -0.9
439,413 - GFF3576 0.56 +0.8
439,413 - GFF3576 0.56 -0.3
439,586 + GFF3576 0.84 -0.1
439,586 + GFF3576 0.84 +1.4
439,587 - GFF3576 0.85 -0.2

Or see this region's nucleotide sequence