Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3523 and GFF3524 are separated by 140 nucleotides GFF3524 and GFF3525 are separated by 100 nucleotides GFF3525 and GFF3526 are separated by 69 nucleotides
GFF3523 - hypothetical protein, at 373,929 to 374,864
GFF3523
GFF3524 - hypothetical protein, at 375,005 to 375,931
GFF3524
GFF3525 - hypothetical protein, at 376,032 to 376,778
GFF3525
GFF3526 - NAD-dependent malic enzyme, at 376,848 to 379,127
GFF3526
Position (kb) 375
376 Strain fitness (log2 ratio) -2
-1
0
1 at 374.053 kb on + strand, within GFF3523 at 374.053 kb on + strand, within GFF3523 at 374.053 kb on + strand, within GFF3523 at 374.054 kb on - strand, within GFF3523 at 374.230 kb on + strand, within GFF3523 at 374.756 kb on - strand, within GFF3523 at 374.785 kb on + strand at 374.785 kb on + strand at 374.785 kb on + strand at 374.786 kb on - strand at 374.880 kb on - strand at 374.914 kb on + strand at 374.914 kb on + strand at 374.914 kb on + strand at 374.915 kb on - strand at 375.084 kb on + strand at 375.084 kb on + strand at 375.085 kb on - strand at 375.165 kb on + strand, within GFF3524 at 375.393 kb on + strand, within GFF3524 at 375.651 kb on + strand, within GFF3524 at 375.651 kb on + strand, within GFF3524 at 375.651 kb on + strand, within GFF3524 at 375.652 kb on - strand, within GFF3524 at 375.843 kb on + strand at 375.944 kb on - strand at 375.945 kb on + strand at 375.945 kb on + strand at 375.946 kb on - strand at 376.359 kb on + strand, within GFF3525 at 376.360 kb on - strand, within GFF3525 at 376.488 kb on + strand, within GFF3525 at 376.925 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 374,053 + GFF3523 0.13 +0.2 374,053 + GFF3523 0.13 -0.2 374,053 + GFF3523 0.13 -0.3 374,054 - GFF3523 0.13 +0.2 374,230 + GFF3523 0.32 +0.1 374,756 - GFF3523 0.88 -1.0 374,785 + -1.2 374,785 + -0.3 374,785 + +0.0 374,786 - -0.6 374,880 - +0.0 374,914 + -1.9 374,914 + -0.8 374,914 + +0.3 374,915 - +0.0 375,084 + -0.3 375,084 + +0.2 375,085 - -0.1 375,165 + GFF3524 0.17 +1.3 375,393 + GFF3524 0.42 -0.6 375,651 + GFF3524 0.70 +1.3 375,651 + GFF3524 0.70 -0.7 375,651 + GFF3524 0.70 -0.2 375,652 - GFF3524 0.70 +0.1 375,843 + +0.6 375,944 - -0.4 375,945 + -0.6 375,945 + +0.0 375,946 - +0.3 376,359 + GFF3525 0.44 -0.1 376,360 - GFF3525 0.44 -0.8 376,488 + GFF3525 0.61 +0.4 376,925 + +1.2
Or see this region's nucleotide sequence