Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3480 and GFF3481 are separated by 90 nucleotides GFF3481 and GFF3482 are separated by 0 nucleotides GFF3482 and GFF3483 are separated by 227 nucleotides
GFF3480 - putative acyl-CoA dehydrogenase fadE25, at 334,379 to 335,782
GFF3480
GFF3481 - FMN reductase (NADH) NtaB, at 335,873 to 336,421
GFF3481
GFF3482 - Aminomethyltransferase, at 336,422 to 338,716
GFF3482
GFF3483 - hypothetical protein, at 338,944 to 340,626
GFF3483
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 335.558 kb on + strand, within GFF3480 at 335.559 kb on - strand, within GFF3480 at 335.869 kb on + strand at 335.869 kb on + strand at 335.870 kb on - strand at 335.870 kb on - strand at 335.900 kb on + strand at 335.900 kb on + strand at 335.900 kb on + strand at 335.900 kb on + strand at 335.901 kb on - strand at 335.901 kb on - strand at 335.901 kb on - strand at 335.901 kb on - strand at 335.901 kb on - strand at 336.132 kb on - strand, within GFF3481 at 336.132 kb on - strand, within GFF3481 at 336.293 kb on + strand, within GFF3481 at 336.293 kb on + strand, within GFF3481 at 336.294 kb on - strand, within GFF3481 at 336.294 kb on - strand, within GFF3481 at 336.372 kb on - strand at 336.957 kb on - strand, within GFF3482 at 336.957 kb on - strand, within GFF3482 at 336.957 kb on - strand, within GFF3482 at 336.958 kb on + strand, within GFF3482 at 336.964 kb on - strand, within GFF3482 at 336.964 kb on - strand, within GFF3482 at 336.977 kb on + strand, within GFF3482 at 336.977 kb on + strand, within GFF3482 at 336.977 kb on + strand, within GFF3482 at 336.978 kb on - strand, within GFF3482 at 336.978 kb on - strand, within GFF3482 at 337.125 kb on - strand, within GFF3482 at 337.133 kb on + strand, within GFF3482 at 337.223 kb on + strand, within GFF3482 at 337.226 kb on + strand, within GFF3482 at 337.227 kb on - strand, within GFF3482 at 337.242 kb on - strand, within GFF3482 at 337.242 kb on - strand, within GFF3482 at 337.338 kb on - strand, within GFF3482 at 337.342 kb on + strand, within GFF3482 at 337.343 kb on - strand, within GFF3482 at 337.404 kb on - strand, within GFF3482 at 337.511 kb on + strand, within GFF3482 at 337.618 kb on + strand, within GFF3482 at 337.618 kb on + strand, within GFF3482 at 337.619 kb on - strand, within GFF3482 at 337.638 kb on - strand, within GFF3482 at 337.638 kb on - strand, within GFF3482 at 337.638 kb on - strand, within GFF3482 at 337.692 kb on - strand, within GFF3482 at 337.832 kb on + strand, within GFF3482 at 337.848 kb on - strand, within GFF3482 at 338.168 kb on + strand, within GFF3482 at 338.168 kb on + strand, within GFF3482 at 338.168 kb on + strand, within GFF3482 at 338.168 kb on + strand, within GFF3482 at 338.170 kb on + strand, within GFF3482 at 338.170 kb on + strand, within GFF3482 at 338.327 kb on + strand, within GFF3482 at 338.327 kb on + strand, within GFF3482 at 338.328 kb on - strand, within GFF3482 at 338.354 kb on + strand, within GFF3482 at 338.354 kb on + strand, within GFF3482 at 338.355 kb on - strand, within GFF3482 at 338.355 kb on - strand, within GFF3482 at 338.753 kb on + strand at 338.753 kb on + strand at 338.754 kb on - strand at 338.819 kb on - strand at 338.819 kb on - strand at 338.825 kb on - strand at 338.927 kb on - strand at 338.927 kb on - strand at 338.927 kb on - strand at 338.949 kb on + strand at 338.949 kb on + strand at 338.949 kb on + strand at 339.110 kb on + strand at 339.110 kb on + strand at 339.110 kb on + strand at 339.205 kb on + strand, within GFF3483 at 339.205 kb on + strand, within GFF3483 at 339.319 kb on + strand, within GFF3483 at 339.319 kb on + strand, within GFF3483 at 339.320 kb on - strand, within GFF3483 at 339.709 kb on + strand, within GFF3483 at 339.710 kb on - strand, within GFF3483 at 339.710 kb on - strand, within GFF3483 at 339.710 kb on - strand, within GFF3483
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 335,558 + GFF3480 0.84 -0.9 335,559 - GFF3480 0.84 +0.3 335,869 + +0.5 335,869 + -1.4 335,870 - +1.5 335,870 - +0.1 335,900 + -0.6 335,900 + -1.4 335,900 + +0.1 335,900 + +0.8 335,901 - -2.4 335,901 - +0.0 335,901 - +1.7 335,901 - +0.1 335,901 - +0.4 336,132 - GFF3481 0.47 -1.6 336,132 - GFF3481 0.47 -0.1 336,293 + GFF3481 0.77 -2.8 336,293 + GFF3481 0.77 +1.4 336,294 - GFF3481 0.77 -1.3 336,294 - GFF3481 0.77 +0.0 336,372 - +1.0 336,957 - GFF3482 0.23 -0.8 336,957 - GFF3482 0.23 -0.6 336,957 - GFF3482 0.23 -2.2 336,958 + GFF3482 0.23 -0.5 336,964 - GFF3482 0.24 +0.0 336,964 - GFF3482 0.24 -0.3 336,977 + GFF3482 0.24 -0.4 336,977 + GFF3482 0.24 +0.5 336,977 + GFF3482 0.24 +0.2 336,978 - GFF3482 0.24 -1.0 336,978 - GFF3482 0.24 +0.1 337,125 - GFF3482 0.31 +0.0 337,133 + GFF3482 0.31 -0.8 337,223 + GFF3482 0.35 +0.3 337,226 + GFF3482 0.35 +0.3 337,227 - GFF3482 0.35 -1.4 337,242 - GFF3482 0.36 -0.7 337,242 - GFF3482 0.36 -0.6 337,338 - GFF3482 0.40 +0.9 337,342 + GFF3482 0.40 -0.1 337,343 - GFF3482 0.40 -0.0 337,404 - GFF3482 0.43 -0.8 337,511 + GFF3482 0.47 -0.8 337,618 + GFF3482 0.52 -0.6 337,618 + GFF3482 0.52 +1.0 337,619 - GFF3482 0.52 +1.2 337,638 - GFF3482 0.53 -0.4 337,638 - GFF3482 0.53 -0.4 337,638 - GFF3482 0.53 -2.1 337,692 - GFF3482 0.55 -0.6 337,832 + GFF3482 0.61 -1.3 337,848 - GFF3482 0.62 +0.6 338,168 + GFF3482 0.76 +1.6 338,168 + GFF3482 0.76 -0.4 338,168 + GFF3482 0.76 +0.4 338,168 + GFF3482 0.76 +0.5 338,170 + GFF3482 0.76 -0.3 338,170 + GFF3482 0.76 -0.2 338,327 + GFF3482 0.83 -0.3 338,327 + GFF3482 0.83 -1.2 338,328 - GFF3482 0.83 +0.5 338,354 + GFF3482 0.84 -0.5 338,354 + GFF3482 0.84 -0.8 338,355 - GFF3482 0.84 -1.4 338,355 - GFF3482 0.84 -0.7 338,753 + -0.8 338,753 + -0.1 338,754 - -1.3 338,819 - +0.5 338,819 - +0.0 338,825 - -1.1 338,927 - +0.2 338,927 - +0.3 338,927 - -1.0 338,949 + +0.9 338,949 + -0.4 338,949 + -0.2 339,110 + +0.0 339,110 + +0.6 339,110 + -0.3 339,205 + GFF3483 0.16 +0.2 339,205 + GFF3483 0.16 +1.1 339,319 + GFF3483 0.22 -0.2 339,319 + GFF3483 0.22 -0.2 339,320 - GFF3483 0.22 -0.7 339,709 + GFF3483 0.45 -1.0 339,710 - GFF3483 0.46 +0.4 339,710 - GFF3483 0.46 +0.0 339,710 - GFF3483 0.46 -0.3
Or see this region's nucleotide sequence