Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3446 and GFF3447 are separated by 15 nucleotides GFF3447 and GFF3448 are separated by 98 nucleotides GFF3448 and GFF3449 are separated by 410 nucleotides
GFF3446 - Ribose 1,5-bisphosphate phosphokinase PhnN, at 297,125 to 297,718
GFF3446
GFF3447 - hypothetical protein, at 297,734 to 298,432
GFF3447
GFF3448 - hypothetical protein, at 298,531 to 299,577
GFF3448
GFF3449 - HTH-type transcriptional regulator LutR, at 299,988 to 300,728
GFF3449
Position (kb) 298
299
300 Strain fitness (log2 ratio) -2
-1
0
1 at 297.760 kb on - strand at 297.967 kb on + strand, within GFF3447 at 297.968 kb on - strand, within GFF3447 at 297.968 kb on - strand, within GFF3447 at 297.968 kb on - strand, within GFF3447 at 297.968 kb on - strand, within GFF3447 at 297.969 kb on + strand, within GFF3447 at 297.970 kb on - strand, within GFF3447 at 298.137 kb on + strand, within GFF3447 at 298.464 kb on + strand at 298.464 kb on + strand at 298.465 kb on - strand at 298.622 kb on - strand at 298.716 kb on + strand, within GFF3448 at 298.801 kb on + strand, within GFF3448 at 298.801 kb on + strand, within GFF3448 at 298.802 kb on - strand, within GFF3448 at 299.089 kb on + strand, within GFF3448 at 299.089 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.279 kb on - strand, within GFF3448 at 299.279 kb on - strand, within GFF3448 at 299.402 kb on - strand, within GFF3448 at 299.402 kb on - strand, within GFF3448 at 299.522 kb on - strand at 299.700 kb on + strand at 299.769 kb on + strand at 299.828 kb on + strand at 299.829 kb on - strand at 299.848 kb on + strand at 300.002 kb on - strand at 300.211 kb on + strand, within GFF3449 at 300.565 kb on + strand, within GFF3449 at 300.566 kb on - strand, within GFF3449 at 300.566 kb on - strand, within GFF3449 at 300.566 kb on - strand, within GFF3449
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 297,760 - -0.2 297,967 + GFF3447 0.33 +0.2 297,968 - GFF3447 0.33 +0.9 297,968 - GFF3447 0.33 +0.3 297,968 - GFF3447 0.33 -0.3 297,968 - GFF3447 0.33 +0.3 297,969 + GFF3447 0.34 +0.8 297,970 - GFF3447 0.34 -2.5 298,137 + GFF3447 0.58 -0.8 298,464 + -1.2 298,464 + +0.6 298,465 - -0.2 298,622 - -0.4 298,716 + GFF3448 0.18 +0.7 298,801 + GFF3448 0.26 +0.2 298,801 + GFF3448 0.26 +0.3 298,802 - GFF3448 0.26 -0.2 299,089 + GFF3448 0.53 +0.5 299,089 + GFF3448 0.53 +0.4 299,278 + GFF3448 0.71 -0.3 299,278 + GFF3448 0.71 +0.2 299,278 + GFF3448 0.71 -0.2 299,278 + GFF3448 0.71 +0.1 299,278 + GFF3448 0.71 +0.3 299,279 - GFF3448 0.71 +0.1 299,279 - GFF3448 0.71 -0.1 299,402 - GFF3448 0.83 -0.6 299,402 - GFF3448 0.83 -0.3 299,522 - +0.1 299,700 + -0.3 299,769 + +0.2 299,828 + +0.2 299,829 - +0.4 299,848 + +0.9 300,002 - -0.8 300,211 + GFF3449 0.30 +0.3 300,565 + GFF3449 0.78 +1.0 300,566 - GFF3449 0.78 +0.0 300,566 - GFF3449 0.78 +0.0 300,566 - GFF3449 0.78 +0.8
Or see this region's nucleotide sequence