Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3443 and GFF3444 overlap by 4 nucleotides GFF3444 and GFF3445 are separated by 90 nucleotides GFF3445 and GFF3446 overlap by 4 nucleotides GFF3446 and GFF3447 are separated by 15 nucleotides
GFF3443 - Putative phosphonates utilization ATP-binding protein PhnK, at 294,340 to 295,119
GFF3443
GFF3444 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL, at 295,116 to 295,901
GFF3444
GFF3445 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 295,992 to 297,128
GFF3445
GFF3446 - Ribose 1,5-bisphosphate phosphokinase PhnN, at 297,125 to 297,718
GFF3446
GFF3447 - hypothetical protein, at 297,734 to 298,432
GFF3447
Position (kb) 295
296
297
298 Strain fitness (log2 ratio) -2
-1
0
1 at 295.081 kb on + strand at 295.082 kb on - strand at 295.381 kb on - strand, within GFF3444 at 295.381 kb on - strand, within GFF3444 at 295.498 kb on - strand, within GFF3444 at 296.420 kb on + strand, within GFF3445 at 296.421 kb on - strand, within GFF3445 at 296.535 kb on + strand, within GFF3445 at 296.535 kb on + strand, within GFF3445 at 296.535 kb on + strand, within GFF3445 at 296.539 kb on - strand, within GFF3445 at 296.539 kb on - strand, within GFF3445 at 296.539 kb on - strand, within GFF3445 at 296.539 kb on - strand, within GFF3445 at 296.614 kb on - strand, within GFF3445 at 296.898 kb on + strand, within GFF3445 at 296.899 kb on - strand, within GFF3445 at 296.899 kb on - strand, within GFF3445 at 296.899 kb on - strand, within GFF3445 at 296.899 kb on - strand, within GFF3445 at 297.398 kb on + strand, within GFF3446 at 297.398 kb on + strand, within GFF3446 at 297.398 kb on + strand, within GFF3446 at 297.760 kb on - strand at 297.967 kb on + strand, within GFF3447 at 297.968 kb on - strand, within GFF3447 at 297.968 kb on - strand, within GFF3447 at 297.968 kb on - strand, within GFF3447 at 297.968 kb on - strand, within GFF3447 at 297.969 kb on + strand, within GFF3447 at 297.970 kb on - strand, within GFF3447
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 295,081 + +0.0 295,082 - -0.3 295,381 - GFF3444 0.34 +0.1 295,381 - GFF3444 0.34 -1.7 295,498 - GFF3444 0.49 +0.6 296,420 + GFF3445 0.38 +0.4 296,421 - GFF3445 0.38 +0.3 296,535 + GFF3445 0.48 +1.2 296,535 + GFF3445 0.48 +0.4 296,535 + GFF3445 0.48 +0.7 296,539 - GFF3445 0.48 -0.1 296,539 - GFF3445 0.48 +0.3 296,539 - GFF3445 0.48 -0.5 296,539 - GFF3445 0.48 +1.1 296,614 - GFF3445 0.55 +0.9 296,898 + GFF3445 0.80 +0.9 296,899 - GFF3445 0.80 -0.2 296,899 - GFF3445 0.80 +0.8 296,899 - GFF3445 0.80 -0.9 296,899 - GFF3445 0.80 +1.0 297,398 + GFF3446 0.46 +0.3 297,398 + GFF3446 0.46 +0.5 297,398 + GFF3446 0.46 +0.3 297,760 - -0.2 297,967 + GFF3447 0.33 +0.2 297,968 - GFF3447 0.33 +0.9 297,968 - GFF3447 0.33 +0.3 297,968 - GFF3447 0.33 -0.3 297,968 - GFF3447 0.33 +0.3 297,969 + GFF3447 0.34 +0.8 297,970 - GFF3447 0.34 -2.5
Or see this region's nucleotide sequence