Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3411 and GFF3412 are separated by 64 nucleotides GFF3412 and GFF3413 are separated by 30 nucleotides
GFF3411 - putative FMNH2-dependent monooxygenase SfnC, at 255,790 to 257,019
GFF3411
GFF3412 - malonic semialdehyde reductase RutE, at 257,084 to 257,686
GFF3412
GFF3413 - FMNH(2)-dependent dimethylsulfone monooxygenase, at 257,717 to 258,904
GFF3413
Position (kb) 257
258 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.100 kb on - strand, within GFF3411 at 256.100 kb on - strand, within GFF3411 at 256.100 kb on - strand, within GFF3411 at 256.114 kb on + strand, within GFF3411 at 256.115 kb on - strand, within GFF3411 at 256.115 kb on - strand, within GFF3411 at 256.270 kb on + strand, within GFF3411 at 256.270 kb on + strand, within GFF3411 at 256.270 kb on + strand, within GFF3411 at 256.271 kb on - strand, within GFF3411 at 256.271 kb on - strand, within GFF3411 at 256.273 kb on + strand, within GFF3411 at 256.273 kb on + strand, within GFF3411 at 256.274 kb on - strand, within GFF3411 at 256.274 kb on - strand, within GFF3411 at 256.492 kb on + strand, within GFF3411 at 256.504 kb on + strand, within GFF3411 at 256.612 kb on + strand, within GFF3411 at 256.612 kb on + strand, within GFF3411 at 256.612 kb on + strand, within GFF3411 at 256.612 kb on + strand, within GFF3411 at 256.615 kb on + strand, within GFF3411 at 256.616 kb on - strand, within GFF3411 at 256.952 kb on - strand at 257.079 kb on - strand at 257.223 kb on + strand, within GFF3412 at 257.224 kb on - strand, within GFF3412 at 257.508 kb on + strand, within GFF3412 at 257.509 kb on - strand, within GFF3412 at 257.756 kb on - strand at 257.794 kb on - strand at 257.956 kb on - strand, within GFF3413 at 258.018 kb on + strand, within GFF3413 at 258.019 kb on - strand, within GFF3413 at 258.258 kb on + strand, within GFF3413 at 258.259 kb on - strand, within GFF3413 at 258.279 kb on + strand, within GFF3413 at 258.279 kb on + strand, within GFF3413 at 258.324 kb on + strand, within GFF3413 at 258.324 kb on + strand, within GFF3413 at 258.324 kb on + strand, within GFF3413 at 258.325 kb on - strand, within GFF3413 at 258.534 kb on + strand, within GFF3413 at 258.535 kb on - strand, within GFF3413 at 258.535 kb on - strand, within GFF3413 at 258.535 kb on - strand, within GFF3413 at 258.631 kb on - strand, within GFF3413 at 258.631 kb on - strand, within GFF3413
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 256,100 - GFF3411 0.25 +0.9 256,100 - GFF3411 0.25 -0.8 256,100 - GFF3411 0.25 -0.4 256,114 + GFF3411 0.26 -0.2 256,115 - GFF3411 0.26 +0.0 256,115 - GFF3411 0.26 +0.4 256,270 + GFF3411 0.39 +0.6 256,270 + GFF3411 0.39 -1.2 256,270 + GFF3411 0.39 +0.4 256,271 - GFF3411 0.39 -0.8 256,271 - GFF3411 0.39 -2.0 256,273 + GFF3411 0.39 -0.6 256,273 + GFF3411 0.39 -0.4 256,274 - GFF3411 0.39 -0.2 256,274 - GFF3411 0.39 -0.2 256,492 + GFF3411 0.57 +0.4 256,504 + GFF3411 0.58 -0.6 256,612 + GFF3411 0.67 -0.2 256,612 + GFF3411 0.67 +0.6 256,612 + GFF3411 0.67 -0.4 256,612 + GFF3411 0.67 -0.6 256,615 + GFF3411 0.67 -0.3 256,616 - GFF3411 0.67 -0.7 256,952 - -0.0 257,079 - -0.1 257,223 + GFF3412 0.23 +0.2 257,224 - GFF3412 0.23 +0.3 257,508 + GFF3412 0.70 -0.2 257,509 - GFF3412 0.70 -1.7 257,756 - +0.2 257,794 - -0.8 257,956 - GFF3413 0.20 +0.2 258,018 + GFF3413 0.25 +0.6 258,019 - GFF3413 0.25 +0.7 258,258 + GFF3413 0.46 -0.2 258,259 - GFF3413 0.46 -0.2 258,279 + GFF3413 0.47 -0.3 258,279 + GFF3413 0.47 -0.3 258,324 + GFF3413 0.51 +0.6 258,324 + GFF3413 0.51 +1.1 258,324 + GFF3413 0.51 -0.8 258,325 - GFF3413 0.51 +0.1 258,534 + GFF3413 0.69 +0.2 258,535 - GFF3413 0.69 +1.1 258,535 - GFF3413 0.69 -0.7 258,535 - GFF3413 0.69 +2.0 258,631 - GFF3413 0.77 -0.6 258,631 - GFF3413 0.77 +0.6
Or see this region's nucleotide sequence