Strain Fitness in Xanthobacter sp. DMC5 around GFF3392

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3391 and GFF3392 are separated by 6 nucleotidesGFF3392 and GFF3393 are separated by 114 nucleotidesGFF3393 and GFF3394 are separated by 86 nucleotides GFF3391 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 237,544 to 238,566 GFF3391 GFF3392 - Adaptive-response sensory-kinase SasA, at 238,573 to 239,655 GFF3392 GFF3393 - hypothetical protein, at 239,770 to 240,261 GFF3393 GFF3394 - hypothetical protein, at 240,348 to 240,959 GFF3394 Position (kb) 238 239 240Strain fitness (log2 ratio) -1 0 1at 239.153 kb on + strand, within GFF3392at 239.154 kb on - strand, within GFF3392at 239.856 kb on - strand, within GFF3393at 240.142 kb on + strand, within GFF3393at 240.142 kb on + strand, within GFF3393at 240.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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239,153 + GFF3392 0.54 +0.1
239,154 - GFF3392 0.54 +1.2
239,856 - GFF3393 0.17 +0.0
240,142 + GFF3393 0.76 -0.4
240,142 + GFF3393 0.76 +1.7
240,357 + -0.6

Or see this region's nucleotide sequence