Strain Fitness in Xanthobacter sp. DMC5 around GFF3388

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3387 and GFF3388 are separated by 75 nucleotidesGFF3388 and GFF3389 are separated by 395 nucleotides GFF3387 - hypothetical protein, at 232,253 to 233,662 GFF3387 GFF3388 - hypothetical protein, at 233,738 to 235,366 GFF3388 GFF3389 - Superoxide dismutase [Mn], at 235,762 to 236,358 GFF3389 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -2 -1 0 1at 232.763 kb on - strand, within GFF3387at 232.763 kb on - strand, within GFF3387at 233.024 kb on + strand, within GFF3387at 233.024 kb on + strand, within GFF3387at 233.024 kb on + strand, within GFF3387at 233.079 kb on - strand, within GFF3387at 233.207 kb on + strand, within GFF3387at 233.207 kb on + strand, within GFF3387at 233.207 kb on + strand, within GFF3387at 233.208 kb on - strand, within GFF3387at 233.208 kb on - strand, within GFF3387at 233.376 kb on - strand, within GFF3387at 233.377 kb on + strand, within GFF3387at 233.377 kb on + strand, within GFF3387at 233.377 kb on + strand, within GFF3387at 233.431 kb on + strand, within GFF3387at 233.431 kb on + strand, within GFF3387at 233.431 kb on + strand, within GFF3387at 233.432 kb on - strand, within GFF3387at 233.432 kb on - strand, within GFF3387at 233.566 kb on + strandat 233.566 kb on + strandat 233.733 kb on + strandat 233.788 kb on - strandat 233.788 kb on - strandat 233.799 kb on + strandat 233.799 kb on + strandat 233.799 kb on + strandat 233.856 kb on + strandat 233.857 kb on - strandat 233.875 kb on + strandat 233.876 kb on - strandat 233.876 kb on - strandat 233.877 kb on + strandat 233.877 kb on + strandat 233.877 kb on + strandat 233.878 kb on - strandat 233.878 kb on - strandat 233.878 kb on - strandat 233.878 kb on - strandat 233.878 kb on - strandat 233.878 kb on - strandat 233.878 kb on - strandat 233.878 kb on - strandat 233.901 kb on + strand, within GFF3388at 233.901 kb on + strand, within GFF3388at 233.913 kb on + strand, within GFF3388at 233.914 kb on - strand, within GFF3388at 234.012 kb on + strand, within GFF3388at 234.012 kb on + strand, within GFF3388at 234.118 kb on + strand, within GFF3388at 234.119 kb on - strand, within GFF3388at 234.143 kb on + strand, within GFF3388at 234.249 kb on + strand, within GFF3388at 234.249 kb on + strand, within GFF3388at 234.250 kb on - strand, within GFF3388at 234.250 kb on - strand, within GFF3388at 234.250 kb on - strand, within GFF3388at 234.250 kb on - strand, within GFF3388at 234.306 kb on + strand, within GFF3388at 234.306 kb on + strand, within GFF3388at 234.306 kb on + strand, within GFF3388at 234.306 kb on + strand, within GFF3388at 234.306 kb on + strand, within GFF3388at 234.306 kb on + strand, within GFF3388at 234.306 kb on + strand, within GFF3388at 234.307 kb on - strand, within GFF3388at 234.307 kb on - strand, within GFF3388at 234.307 kb on - strand, within GFF3388at 234.395 kb on - strand, within GFF3388at 234.416 kb on + strand, within GFF3388at 234.417 kb on - strand, within GFF3388at 234.495 kb on + strand, within GFF3388at 234.496 kb on - strand, within GFF3388at 234.496 kb on - strand, within GFF3388at 234.573 kb on + strand, within GFF3388at 234.576 kb on + strand, within GFF3388at 234.576 kb on + strand, within GFF3388at 234.576 kb on + strand, within GFF3388at 234.645 kb on + strand, within GFF3388at 234.646 kb on - strand, within GFF3388at 234.765 kb on + strand, within GFF3388at 234.766 kb on - strand, within GFF3388at 234.766 kb on - strand, within GFF3388at 234.885 kb on + strand, within GFF3388at 234.886 kb on - strand, within GFF3388at 234.886 kb on - strand, within GFF3388at 235.149 kb on + strand, within GFF3388at 235.150 kb on - strand, within GFF3388at 235.152 kb on + strand, within GFF3388at 235.153 kb on - strand, within GFF3388at 235.204 kb on - strandat 235.209 kb on + strandat 235.209 kb on + strandat 235.210 kb on - strandat 235.462 kb on - strandat 235.476 kb on + strandat 235.477 kb on - strandat 235.581 kb on + strandat 235.638 kb on + strandat 235.675 kb on + strandat 235.676 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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232,763 - GFF3387 0.36 +1.0
232,763 - GFF3387 0.36 +0.6
233,024 + GFF3387 0.55 +0.0
233,024 + GFF3387 0.55 -0.4
233,024 + GFF3387 0.55 -0.5
233,079 - GFF3387 0.59 +1.0
233,207 + GFF3387 0.68 +0.4
233,207 + GFF3387 0.68 -1.0
233,207 + GFF3387 0.68 +0.1
233,208 - GFF3387 0.68 -0.1
233,208 - GFF3387 0.68 +0.3
233,376 - GFF3387 0.80 +0.7
233,377 + GFF3387 0.80 +0.9
233,377 + GFF3387 0.80 +1.2
233,377 + GFF3387 0.80 +1.5
233,431 + GFF3387 0.84 -0.4
233,431 + GFF3387 0.84 +0.5
233,431 + GFF3387 0.84 +0.0
233,432 - GFF3387 0.84 -0.3
233,432 - GFF3387 0.84 -0.8
233,566 + +0.2
233,566 + -0.2
233,733 + -1.0
233,788 - +0.4
233,788 - -1.2
233,799 + -2.1
233,799 + +1.0
233,799 + +0.4
233,856 + -0.5
233,857 - +0.6
233,875 + -0.4
233,876 - -0.2
233,876 - -0.5
233,877 + -1.2
233,877 + -0.6
233,877 + -0.2
233,878 - +0.1
233,878 - -0.7
233,878 - +0.3
233,878 - -1.5
233,878 - -0.1
233,878 - -1.3
233,878 - +0.0
233,878 - -0.6
233,901 + GFF3388 0.10 +0.7
233,901 + GFF3388 0.10 -0.9
233,913 + GFF3388 0.11 +0.1
233,914 - GFF3388 0.11 +0.3
234,012 + GFF3388 0.17 +0.1
234,012 + GFF3388 0.17 +0.7
234,118 + GFF3388 0.23 +0.7
234,119 - GFF3388 0.23 +0.2
234,143 + GFF3388 0.25 +0.8
234,249 + GFF3388 0.31 -0.6
234,249 + GFF3388 0.31 +0.9
234,250 - GFF3388 0.31 -1.0
234,250 - GFF3388 0.31 +0.3
234,250 - GFF3388 0.31 -0.1
234,250 - GFF3388 0.31 -0.3
234,306 + GFF3388 0.35 -0.4
234,306 + GFF3388 0.35 -0.5
234,306 + GFF3388 0.35 -0.4
234,306 + GFF3388 0.35 +0.2
234,306 + GFF3388 0.35 -0.4
234,306 + GFF3388 0.35 -0.1
234,306 + GFF3388 0.35 -0.2
234,307 - GFF3388 0.35 -0.2
234,307 - GFF3388 0.35 +0.2
234,307 - GFF3388 0.35 -0.3
234,395 - GFF3388 0.40 +0.7
234,416 + GFF3388 0.42 -0.4
234,417 - GFF3388 0.42 -0.7
234,495 + GFF3388 0.46 -0.3
234,496 - GFF3388 0.47 -0.2
234,496 - GFF3388 0.47 +0.7
234,573 + GFF3388 0.51 +1.2
234,576 + GFF3388 0.51 -0.7
234,576 + GFF3388 0.51 -0.5
234,576 + GFF3388 0.51 -0.7
234,645 + GFF3388 0.56 -0.8
234,646 - GFF3388 0.56 -0.0
234,765 + GFF3388 0.63 +0.5
234,766 - GFF3388 0.63 -1.6
234,766 - GFF3388 0.63 +0.2
234,885 + GFF3388 0.70 -0.2
234,886 - GFF3388 0.70 +0.8
234,886 - GFF3388 0.70 +0.4
235,149 + GFF3388 0.87 +0.5
235,150 - GFF3388 0.87 +0.7
235,152 + GFF3388 0.87 -0.2
235,153 - GFF3388 0.87 +0.2
235,204 - +1.5
235,209 + -0.9
235,209 + -0.7
235,210 - -0.4
235,462 - -0.2
235,476 + +0.6
235,477 - -0.4
235,581 + -0.4
235,638 + -1.2
235,675 + +0.8
235,676 - -0.1

Or see this region's nucleotide sequence