Strain Fitness in Xanthobacter sp. DMC5 around GFF3347

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3346 and GFF3347 overlap by 13 nucleotidesGFF3347 and GFF3348 are separated by 24 nucleotides GFF3346 - Glucans biosynthesis protein G, at 188,954 to 190,465 GFF3346 GFF3347 - Glucans biosynthesis glucosyltransferase H, at 190,453 to 192,576 GFF3347 GFF3348 - HTH-type transcriptional regulator GltC, at 192,601 to 193,482 GFF3348 Position (kb) 190 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 189.557 kb on + strand, within GFF3346at 189.557 kb on + strand, within GFF3346at 189.557 kb on + strand, within GFF3346at 189.557 kb on + strand, within GFF3346at 189.558 kb on - strand, within GFF3346at 189.558 kb on - strand, within GFF3346at 189.558 kb on - strand, within GFF3346at 189.558 kb on - strand, within GFF3346at 189.558 kb on - strand, within GFF3346at 189.558 kb on - strand, within GFF3346at 189.692 kb on + strand, within GFF3346at 189.968 kb on + strand, within GFF3346at 189.969 kb on - strand, within GFF3346at 190.118 kb on + strand, within GFF3346at 190.119 kb on - strand, within GFF3346at 190.119 kb on - strand, within GFF3346at 190.124 kb on + strand, within GFF3346at 190.124 kb on + strand, within GFF3346at 190.124 kb on + strand, within GFF3346at 190.124 kb on + strand, within GFF3346at 190.124 kb on + strand, within GFF3346at 190.124 kb on + strand, within GFF3346at 190.124 kb on + strand, within GFF3346at 190.125 kb on - strand, within GFF3346at 190.125 kb on - strand, within GFF3346at 190.125 kb on - strand, within GFF3346at 190.125 kb on - strand, within GFF3346at 190.125 kb on - strand, within GFF3346at 190.125 kb on - strand, within GFF3346at 190.125 kb on - strand, within GFF3346at 190.130 kb on + strand, within GFF3346at 190.130 kb on + strand, within GFF3346at 190.131 kb on - strand, within GFF3346at 190.398 kb on + strandat 190.398 kb on + strandat 190.398 kb on + strandat 190.398 kb on + strandat 190.399 kb on - strandat 190.666 kb on + strand, within GFF3347at 190.666 kb on + strand, within GFF3347at 190.666 kb on + strand, within GFF3347at 190.666 kb on + strand, within GFF3347at 190.666 kb on + strand, within GFF3347at 190.666 kb on + strand, within GFF3347at 190.667 kb on - strand, within GFF3347at 190.667 kb on - strand, within GFF3347at 190.697 kb on - strand, within GFF3347at 190.873 kb on + strand, within GFF3347at 190.873 kb on + strand, within GFF3347at 190.873 kb on + strand, within GFF3347at 190.874 kb on - strand, within GFF3347at 190.874 kb on - strand, within GFF3347at 190.874 kb on - strand, within GFF3347at 191.132 kb on - strand, within GFF3347at 191.132 kb on - strand, within GFF3347at 191.302 kb on + strand, within GFF3347at 191.356 kb on + strand, within GFF3347at 191.356 kb on + strand, within GFF3347at 191.357 kb on - strand, within GFF3347at 191.357 kb on - strand, within GFF3347at 191.357 kb on - strand, within GFF3347at 191.449 kb on - strand, within GFF3347at 191.505 kb on - strand, within GFF3347at 191.505 kb on - strand, within GFF3347at 191.505 kb on - strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.506 kb on + strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.507 kb on - strand, within GFF3347at 191.533 kb on + strand, within GFF3347at 191.534 kb on - strand, within GFF3347at 191.677 kb on + strand, within GFF3347at 191.677 kb on + strand, within GFF3347at 191.677 kb on + strand, within GFF3347at 191.678 kb on - strand, within GFF3347at 191.678 kb on - strand, within GFF3347at 191.678 kb on - strand, within GFF3347at 191.758 kb on + strand, within GFF3347at 191.758 kb on + strand, within GFF3347at 191.758 kb on + strand, within GFF3347at 192.001 kb on + strand, within GFF3347at 192.001 kb on + strand, within GFF3347at 192.001 kb on + strand, within GFF3347at 192.001 kb on + strand, within GFF3347at 192.002 kb on - strand, within GFF3347at 192.688 kb on + strandat 192.887 kb on + strand, within GFF3348at 193.166 kb on + strand, within GFF3348at 193.167 kb on - strand, within GFF3348at 193.167 kb on - strand, within GFF3348

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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189,557 + GFF3346 0.40 -0.3
189,557 + GFF3346 0.40 -0.3
189,557 + GFF3346 0.40 -0.2
189,557 + GFF3346 0.40 -0.5
189,558 - GFF3346 0.40 -0.4
189,558 - GFF3346 0.40 -1.0
189,558 - GFF3346 0.40 -1.7
189,558 - GFF3346 0.40 +0.2
189,558 - GFF3346 0.40 +0.2
189,558 - GFF3346 0.40 +0.6
189,692 + GFF3346 0.49 -0.2
189,968 + GFF3346 0.67 -0.2
189,969 - GFF3346 0.67 -0.1
190,118 + GFF3346 0.77 -0.3
190,119 - GFF3346 0.77 -0.5
190,119 - GFF3346 0.77 -0.7
190,124 + GFF3346 0.77 -0.6
190,124 + GFF3346 0.77 +0.1
190,124 + GFF3346 0.77 +2.0
190,124 + GFF3346 0.77 -0.5
190,124 + GFF3346 0.77 +0.6
190,124 + GFF3346 0.77 +0.0
190,124 + GFF3346 0.77 +0.7
190,125 - GFF3346 0.77 -0.6
190,125 - GFF3346 0.77 +0.4
190,125 - GFF3346 0.77 -0.8
190,125 - GFF3346 0.77 -0.5
190,125 - GFF3346 0.77 -0.1
190,125 - GFF3346 0.77 +0.3
190,125 - GFF3346 0.77 -0.3
190,130 + GFF3346 0.78 +0.1
190,130 + GFF3346 0.78 +0.6
190,131 - GFF3346 0.78 -0.3
190,398 + -1.1
190,398 + -1.5
190,398 + +1.0
190,398 + -1.0
190,399 - +0.0
190,666 + GFF3347 0.10 -0.2
190,666 + GFF3347 0.10 -1.0
190,666 + GFF3347 0.10 -0.1
190,666 + GFF3347 0.10 -0.2
190,666 + GFF3347 0.10 -0.1
190,666 + GFF3347 0.10 -1.2
190,667 - GFF3347 0.10 +0.8
190,667 - GFF3347 0.10 -0.7
190,697 - GFF3347 0.11 +0.0
190,873 + GFF3347 0.20 -0.4
190,873 + GFF3347 0.20 +0.2
190,873 + GFF3347 0.20 -0.3
190,874 - GFF3347 0.20 -0.3
190,874 - GFF3347 0.20 +0.9
190,874 - GFF3347 0.20 -0.4
191,132 - GFF3347 0.32 +0.0
191,132 - GFF3347 0.32 +0.2
191,302 + GFF3347 0.40 -1.9
191,356 + GFF3347 0.43 -0.4
191,356 + GFF3347 0.43 -1.1
191,357 - GFF3347 0.43 -0.0
191,357 - GFF3347 0.43 +0.1
191,357 - GFF3347 0.43 +1.8
191,449 - GFF3347 0.47 -1.2
191,505 - GFF3347 0.50 +0.6
191,505 - GFF3347 0.50 +0.0
191,505 - GFF3347 0.50 -0.8
191,506 + GFF3347 0.50 +0.1
191,506 + GFF3347 0.50 +1.0
191,506 + GFF3347 0.50 -1.8
191,506 + GFF3347 0.50 +0.2
191,506 + GFF3347 0.50 -1.0
191,506 + GFF3347 0.50 -1.2
191,506 + GFF3347 0.50 +1.4
191,506 + GFF3347 0.50 -1.0
191,506 + GFF3347 0.50 +0.1
191,506 + GFF3347 0.50 -0.9
191,506 + GFF3347 0.50 -0.8
191,507 - GFF3347 0.50 -0.2
191,507 - GFF3347 0.50 -0.5
191,507 - GFF3347 0.50 -0.8
191,507 - GFF3347 0.50 +0.1
191,507 - GFF3347 0.50 -0.9
191,507 - GFF3347 0.50 -0.7
191,507 - GFF3347 0.50 -0.5
191,507 - GFF3347 0.50 +0.2
191,507 - GFF3347 0.50 +0.5
191,507 - GFF3347 0.50 -0.2
191,507 - GFF3347 0.50 +0.0
191,533 + GFF3347 0.51 +0.1
191,534 - GFF3347 0.51 -1.2
191,677 + GFF3347 0.58 +0.8
191,677 + GFF3347 0.58 -0.5
191,677 + GFF3347 0.58 -0.4
191,678 - GFF3347 0.58 +0.4
191,678 - GFF3347 0.58 +1.6
191,678 - GFF3347 0.58 -1.0
191,758 + GFF3347 0.61 -0.4
191,758 + GFF3347 0.61 -0.6
191,758 + GFF3347 0.61 -0.2
192,001 + GFF3347 0.73 +0.4
192,001 + GFF3347 0.73 +0.4
192,001 + GFF3347 0.73 +0.3
192,001 + GFF3347 0.73 -0.4
192,002 - GFF3347 0.73 -0.2
192,688 + -0.2
192,887 + GFF3348 0.32 -0.8
193,166 + GFF3348 0.64 +0.3
193,167 - GFF3348 0.64 -1.0
193,167 - GFF3348 0.64 -1.2

Or see this region's nucleotide sequence