Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3334 and GFF3335 are separated by 55 nucleotides GFF3335 and GFF3336 are separated by 104 nucleotides GFF3336 and GFF3337 overlap by 4 nucleotides
GFF3334 - hypothetical protein, at 175,767 to 176,630
GFF3334
GFF3335 - hypothetical protein, at 176,686 to 177,420
GFF3335
GFF3336 - Homoserine kinase, at 177,525 to 178,592
GFF3336
GFF3337 - Isoleucine 2-epimerase, at 178,589 to 179,935
GFF3337
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 176.774 kb on - strand, within GFF3335 at 176.833 kb on + strand, within GFF3335 at 176.833 kb on + strand, within GFF3335 at 176.833 kb on + strand, within GFF3335 at 176.864 kb on - strand, within GFF3335 at 176.887 kb on + strand, within GFF3335 at 176.888 kb on - strand, within GFF3335 at 176.888 kb on - strand, within GFF3335 at 176.888 kb on - strand, within GFF3335 at 176.888 kb on - strand, within GFF3335 at 177.166 kb on + strand, within GFF3335 at 177.190 kb on + strand, within GFF3335 at 177.197 kb on - strand, within GFF3335 at 177.301 kb on + strand, within GFF3335 at 177.301 kb on + strand, within GFF3335 at 177.718 kb on + strand, within GFF3336 at 177.718 kb on + strand, within GFF3336 at 177.719 kb on - strand, within GFF3336 at 177.719 kb on - strand, within GFF3336 at 177.719 kb on - strand, within GFF3336 at 177.719 kb on - strand, within GFF3336 at 177.864 kb on + strand, within GFF3336 at 177.864 kb on + strand, within GFF3336 at 178.207 kb on - strand, within GFF3336 at 178.452 kb on + strand, within GFF3336 at 178.452 kb on + strand, within GFF3336 at 178.452 kb on + strand, within GFF3336 at 178.452 kb on + strand, within GFF3336 at 178.452 kb on + strand, within GFF3336 at 178.452 kb on + strand, within GFF3336 at 178.452 kb on + strand, within GFF3336 at 178.453 kb on - strand, within GFF3336 at 178.453 kb on - strand, within GFF3336 at 178.453 kb on - strand, within GFF3336 at 178.453 kb on - strand, within GFF3336 at 178.453 kb on - strand, within GFF3336 at 178.453 kb on - strand, within GFF3336 at 178.453 kb on - strand, within GFF3336 at 178.453 kb on - strand, within GFF3336 at 178.718 kb on + strand at 178.730 kb on + strand, within GFF3337 at 178.730 kb on + strand, within GFF3337 at 178.730 kb on + strand, within GFF3337 at 178.730 kb on + strand, within GFF3337 at 178.730 kb on + strand, within GFF3337 at 178.731 kb on - strand, within GFF3337 at 178.797 kb on - strand, within GFF3337 at 178.797 kb on - strand, within GFF3337 at 178.808 kb on + strand, within GFF3337 at 178.863 kb on - strand, within GFF3337 at 178.863 kb on - strand, within GFF3337 at 178.899 kb on - strand, within GFF3337 at 178.899 kb on - strand, within GFF3337 at 178.899 kb on - strand, within GFF3337 at 179.030 kb on - strand, within GFF3337 at 179.030 kb on - strand, within GFF3337 at 179.067 kb on - strand, within GFF3337 at 179.067 kb on - strand, within GFF3337 at 179.067 kb on - strand, within GFF3337 at 179.067 kb on - strand, within GFF3337 at 179.216 kb on + strand, within GFF3337 at 179.216 kb on + strand, within GFF3337 at 179.216 kb on + strand, within GFF3337 at 179.217 kb on - strand, within GFF3337 at 179.217 kb on - strand, within GFF3337 at 179.297 kb on + strand, within GFF3337 at 179.297 kb on + strand, within GFF3337 at 179.297 kb on + strand, within GFF3337 at 179.297 kb on + strand, within GFF3337 at 179.298 kb on - strand, within GFF3337 at 179.540 kb on + strand, within GFF3337 at 179.541 kb on - strand, within GFF3337
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 176,774 - GFF3335 0.12 -0.2 176,833 + GFF3335 0.20 -0.8 176,833 + GFF3335 0.20 -1.7 176,833 + GFF3335 0.20 -1.0 176,864 - GFF3335 0.24 +0.1 176,887 + GFF3335 0.27 -0.2 176,888 - GFF3335 0.27 -0.3 176,888 - GFF3335 0.27 +0.3 176,888 - GFF3335 0.27 -1.3 176,888 - GFF3335 0.27 +2.0 177,166 + GFF3335 0.65 -0.4 177,190 + GFF3335 0.69 -0.0 177,197 - GFF3335 0.70 -0.5 177,301 + GFF3335 0.84 +0.3 177,301 + GFF3335 0.84 -0.4 177,718 + GFF3336 0.18 +1.0 177,718 + GFF3336 0.18 +0.5 177,719 - GFF3336 0.18 +0.3 177,719 - GFF3336 0.18 +0.9 177,719 - GFF3336 0.18 +0.8 177,719 - GFF3336 0.18 -0.9 177,864 + GFF3336 0.32 +0.1 177,864 + GFF3336 0.32 +0.1 178,207 - GFF3336 0.64 -0.3 178,452 + GFF3336 0.87 -1.0 178,452 + GFF3336 0.87 +0.4 178,452 + GFF3336 0.87 -0.4 178,452 + GFF3336 0.87 -0.3 178,452 + GFF3336 0.87 -1.2 178,452 + GFF3336 0.87 +0.6 178,452 + GFF3336 0.87 +0.1 178,453 - GFF3336 0.87 -0.1 178,453 - GFF3336 0.87 +1.2 178,453 - GFF3336 0.87 +0.2 178,453 - GFF3336 0.87 -0.2 178,453 - GFF3336 0.87 +1.1 178,453 - GFF3336 0.87 -0.4 178,453 - GFF3336 0.87 -1.5 178,453 - GFF3336 0.87 +0.5 178,718 + +0.9 178,730 + GFF3337 0.10 -0.4 178,730 + GFF3337 0.10 -0.1 178,730 + GFF3337 0.10 -0.4 178,730 + GFF3337 0.10 +0.5 178,730 + GFF3337 0.10 +0.1 178,731 - GFF3337 0.11 -0.4 178,797 - GFF3337 0.15 -0.9 178,797 - GFF3337 0.15 -2.1 178,808 + GFF3337 0.16 +0.3 178,863 - GFF3337 0.20 +1.0 178,863 - GFF3337 0.20 -0.5 178,899 - GFF3337 0.23 +0.6 178,899 - GFF3337 0.23 +0.6 178,899 - GFF3337 0.23 -0.6 179,030 - GFF3337 0.33 +1.3 179,030 - GFF3337 0.33 +0.1 179,067 - GFF3337 0.35 +0.1 179,067 - GFF3337 0.35 +0.3 179,067 - GFF3337 0.35 +0.1 179,067 - GFF3337 0.35 +0.5 179,216 + GFF3337 0.47 -0.3 179,216 + GFF3337 0.47 +1.0 179,216 + GFF3337 0.47 +1.5 179,217 - GFF3337 0.47 -1.7 179,217 - GFF3337 0.47 -0.1 179,297 + GFF3337 0.53 -0.8 179,297 + GFF3337 0.53 +0.1 179,297 + GFF3337 0.53 -1.5 179,297 + GFF3337 0.53 -0.1 179,298 - GFF3337 0.53 -1.7 179,540 + GFF3337 0.71 -0.6 179,541 - GFF3337 0.71 -0.7
Or see this region's nucleotide sequence