Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3324 and GFF3325 are separated by 60 nucleotides GFF3325 and GFF3326 overlap by 4 nucleotides GFF3326 and GFF3327 overlap by 4 nucleotides
GFF3324 - P-loop guanosine triphosphatase YjiA, at 164,010 to 165,038
GFF3324
GFF3325 - L-hydantoinase, at 165,099 to 166,505
GFF3325
GFF3326 - Putative aliphatic sulfonates transport permease protein SsuC, at 166,502 to 167,308
GFF3326
GFF3327 - Vitamin B12 import ATP-binding protein BtuD, at 167,305 to 168,117
GFF3327
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.139 kb on + strand, within GFF3324 at 164.385 kb on + strand, within GFF3324 at 164.524 kb on + strand, within GFF3324 at 164.524 kb on + strand, within GFF3324 at 164.524 kb on + strand, within GFF3324 at 164.720 kb on + strand, within GFF3324 at 164.720 kb on + strand, within GFF3324 at 164.721 kb on - strand, within GFF3324 at 164.721 kb on - strand, within GFF3324 at 164.721 kb on - strand, within GFF3324 at 164.825 kb on - strand, within GFF3324 at 164.976 kb on + strand at 164.977 kb on - strand at 164.977 kb on - strand at 165.095 kb on + strand at 165.096 kb on - strand at 165.313 kb on - strand, within GFF3325 at 165.327 kb on + strand, within GFF3325 at 165.327 kb on + strand, within GFF3325 at 165.438 kb on + strand, within GFF3325 at 165.438 kb on + strand, within GFF3325 at 165.438 kb on + strand, within GFF3325 at 165.438 kb on + strand, within GFF3325 at 165.439 kb on - strand, within GFF3325 at 165.439 kb on - strand, within GFF3325 at 165.439 kb on - strand, within GFF3325 at 165.735 kb on + strand, within GFF3325 at 165.736 kb on - strand, within GFF3325 at 165.747 kb on + strand, within GFF3325 at 165.969 kb on + strand, within GFF3325 at 165.969 kb on + strand, within GFF3325 at 165.970 kb on - strand, within GFF3325 at 165.970 kb on - strand, within GFF3325 at 165.970 kb on - strand, within GFF3325 at 165.970 kb on - strand, within GFF3325 at 165.981 kb on + strand, within GFF3325 at 165.982 kb on - strand, within GFF3325 at 166.143 kb on + strand, within GFF3325 at 166.143 kb on + strand, within GFF3325 at 166.143 kb on + strand, within GFF3325 at 166.143 kb on + strand, within GFF3325 at 166.144 kb on - strand, within GFF3325 at 166.144 kb on - strand, within GFF3325 at 166.144 kb on - strand, within GFF3325 at 166.144 kb on - strand, within GFF3325 at 166.144 kb on - strand, within GFF3325 at 166.157 kb on - strand, within GFF3325 at 166.269 kb on + strand, within GFF3325 at 166.308 kb on + strand, within GFF3325 at 166.356 kb on + strand, within GFF3325 at 166.416 kb on + strand at 166.416 kb on + strand at 166.416 kb on + strand at 166.416 kb on + strand at 166.416 kb on + strand at 166.417 kb on - strand at 166.417 kb on - strand at 166.417 kb on - strand at 166.417 kb on - strand at 166.417 kb on - strand at 166.417 kb on - strand at 166.535 kb on + strand at 166.631 kb on + strand, within GFF3326 at 166.632 kb on - strand, within GFF3326 at 166.632 kb on - strand, within GFF3326 at 166.632 kb on - strand, within GFF3326 at 166.632 kb on - strand, within GFF3326
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 164,139 + GFF3324 0.13 -0.1 164,385 + GFF3324 0.36 +0.6 164,524 + GFF3324 0.50 -1.9 164,524 + GFF3324 0.50 -1.5 164,524 + GFF3324 0.50 +0.0 164,720 + GFF3324 0.69 +0.1 164,720 + GFF3324 0.69 -0.2 164,721 - GFF3324 0.69 +0.2 164,721 - GFF3324 0.69 -0.9 164,721 - GFF3324 0.69 -0.3 164,825 - GFF3324 0.79 -0.3 164,976 + +1.3 164,977 - -0.3 164,977 - -0.4 165,095 + -0.4 165,096 - +2.0 165,313 - GFF3325 0.15 +1.0 165,327 + GFF3325 0.16 +0.4 165,327 + GFF3325 0.16 -0.1 165,438 + GFF3325 0.24 -0.6 165,438 + GFF3325 0.24 +0.6 165,438 + GFF3325 0.24 -0.3 165,438 + GFF3325 0.24 -0.8 165,439 - GFF3325 0.24 -0.4 165,439 - GFF3325 0.24 -0.2 165,439 - GFF3325 0.24 +0.7 165,735 + GFF3325 0.45 -0.3 165,736 - GFF3325 0.45 -0.2 165,747 + GFF3325 0.46 -1.6 165,969 + GFF3325 0.62 +2.0 165,969 + GFF3325 0.62 -0.9 165,970 - GFF3325 0.62 +0.3 165,970 - GFF3325 0.62 -0.3 165,970 - GFF3325 0.62 -0.6 165,970 - GFF3325 0.62 +0.4 165,981 + GFF3325 0.63 -0.2 165,982 - GFF3325 0.63 +0.0 166,143 + GFF3325 0.74 +0.4 166,143 + GFF3325 0.74 -0.4 166,143 + GFF3325 0.74 -1.6 166,143 + GFF3325 0.74 +0.8 166,144 - GFF3325 0.74 -0.4 166,144 - GFF3325 0.74 +0.0 166,144 - GFF3325 0.74 +0.7 166,144 - GFF3325 0.74 -0.7 166,144 - GFF3325 0.74 -0.5 166,157 - GFF3325 0.75 -0.4 166,269 + GFF3325 0.83 -1.0 166,308 + GFF3325 0.86 +0.6 166,356 + GFF3325 0.89 +0.0 166,416 + +0.6 166,416 + -0.2 166,416 + -1.3 166,416 + +1.2 166,416 + +0.3 166,417 - -0.2 166,417 - -0.8 166,417 - +0.3 166,417 - -0.6 166,417 - -0.3 166,417 - -0.1 166,535 + +1.3 166,631 + GFF3326 0.16 -0.2 166,632 - GFF3326 0.16 +0.2 166,632 - GFF3326 0.16 -0.4 166,632 - GFF3326 0.16 +0.7 166,632 - GFF3326 0.16 -0.2
Or see this region's nucleotide sequence