Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3323 and GFF3324 are separated by 28 nucleotides GFF3324 and GFF3325 are separated by 60 nucleotides
GFF3323 - hypothetical protein, at 163,007 to 163,981
GFF3323
GFF3324 - P-loop guanosine triphosphatase YjiA, at 164,010 to 165,038
GFF3324
GFF3325 - L-hydantoinase, at 165,099 to 166,505
GFF3325
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.166 kb on + strand, within GFF3323 at 163.445 kb on + strand, within GFF3323 at 163.613 kb on + strand, within GFF3323 at 163.624 kb on + strand, within GFF3323 at 163.625 kb on + strand, within GFF3323 at 163.625 kb on + strand, within GFF3323 at 163.625 kb on + strand, within GFF3323 at 163.625 kb on + strand, within GFF3323 at 163.626 kb on - strand, within GFF3323 at 163.626 kb on - strand, within GFF3323 at 163.626 kb on - strand, within GFF3323 at 163.778 kb on + strand, within GFF3323 at 163.778 kb on + strand, within GFF3323 at 163.952 kb on + strand at 163.952 kb on + strand at 163.964 kb on + strand at 163.964 kb on + strand at 164.139 kb on + strand, within GFF3324 at 164.385 kb on + strand, within GFF3324 at 164.524 kb on + strand, within GFF3324 at 164.524 kb on + strand, within GFF3324 at 164.524 kb on + strand, within GFF3324 at 164.720 kb on + strand, within GFF3324 at 164.720 kb on + strand, within GFF3324 at 164.721 kb on - strand, within GFF3324 at 164.721 kb on - strand, within GFF3324 at 164.721 kb on - strand, within GFF3324 at 164.825 kb on - strand, within GFF3324 at 164.976 kb on + strand at 164.977 kb on - strand at 164.977 kb on - strand at 165.095 kb on + strand at 165.096 kb on - strand at 165.313 kb on - strand, within GFF3325 at 165.327 kb on + strand, within GFF3325 at 165.327 kb on + strand, within GFF3325 at 165.438 kb on + strand, within GFF3325 at 165.438 kb on + strand, within GFF3325 at 165.438 kb on + strand, within GFF3325 at 165.438 kb on + strand, within GFF3325 at 165.439 kb on - strand, within GFF3325 at 165.439 kb on - strand, within GFF3325 at 165.439 kb on - strand, within GFF3325 at 165.735 kb on + strand, within GFF3325 at 165.736 kb on - strand, within GFF3325 at 165.747 kb on + strand, within GFF3325 at 165.969 kb on + strand, within GFF3325 at 165.969 kb on + strand, within GFF3325 at 165.970 kb on - strand, within GFF3325 at 165.970 kb on - strand, within GFF3325 at 165.970 kb on - strand, within GFF3325 at 165.970 kb on - strand, within GFF3325 at 165.981 kb on + strand, within GFF3325 at 165.982 kb on - strand, within GFF3325
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 163,166 + GFF3323 0.16 +0.0 163,445 + GFF3323 0.45 -0.2 163,613 + GFF3323 0.62 -0.1 163,624 + GFF3323 0.63 +0.2 163,625 + GFF3323 0.63 -0.1 163,625 + GFF3323 0.63 +0.4 163,625 + GFF3323 0.63 -0.7 163,625 + GFF3323 0.63 -0.5 163,626 - GFF3323 0.63 -1.3 163,626 - GFF3323 0.63 -0.4 163,626 - GFF3323 0.63 +0.4 163,778 + GFF3323 0.79 -1.3 163,778 + GFF3323 0.79 +0.5 163,952 + +1.1 163,952 + -0.2 163,964 + -0.9 163,964 + +0.8 164,139 + GFF3324 0.13 -0.1 164,385 + GFF3324 0.36 +0.6 164,524 + GFF3324 0.50 -1.9 164,524 + GFF3324 0.50 -1.5 164,524 + GFF3324 0.50 +0.0 164,720 + GFF3324 0.69 +0.1 164,720 + GFF3324 0.69 -0.2 164,721 - GFF3324 0.69 +0.2 164,721 - GFF3324 0.69 -0.9 164,721 - GFF3324 0.69 -0.3 164,825 - GFF3324 0.79 -0.3 164,976 + +1.3 164,977 - -0.3 164,977 - -0.4 165,095 + -0.4 165,096 - +2.0 165,313 - GFF3325 0.15 +1.0 165,327 + GFF3325 0.16 +0.4 165,327 + GFF3325 0.16 -0.1 165,438 + GFF3325 0.24 -0.6 165,438 + GFF3325 0.24 +0.6 165,438 + GFF3325 0.24 -0.3 165,438 + GFF3325 0.24 -0.8 165,439 - GFF3325 0.24 -0.4 165,439 - GFF3325 0.24 -0.2 165,439 - GFF3325 0.24 +0.7 165,735 + GFF3325 0.45 -0.3 165,736 - GFF3325 0.45 -0.2 165,747 + GFF3325 0.46 -1.6 165,969 + GFF3325 0.62 +2.0 165,969 + GFF3325 0.62 -0.9 165,970 - GFF3325 0.62 +0.3 165,970 - GFF3325 0.62 -0.3 165,970 - GFF3325 0.62 -0.6 165,970 - GFF3325 0.62 +0.4 165,981 + GFF3325 0.63 -0.2 165,982 - GFF3325 0.63 +0.0
Or see this region's nucleotide sequence