Strain Fitness in Xanthobacter sp. DMC5 around GFF3316

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3314 and GFF3315 are separated by 3 nucleotidesGFF3315 and GFF3316 are separated by 1 nucleotidesGFF3316 and GFF3317 are separated by 22 nucleotides GFF3314 - hypothetical protein, at 154,184 to 155,506 GFF3314 GFF3315 - Lactose transport system permease protein LacF, at 155,510 to 156,469 GFF3315 GFF3316 - Diacetylchitobiose uptake system permease protein NgcG, at 156,471 to 157,331 GFF3316 GFF3317 - Oligosaccharides import ATP-binding protein MsmX, at 157,354 to 158,511 GFF3317 Position (kb) 156 157 158Strain fitness (log2 ratio) -2 -1 0 1at 155.645 kb on + strand, within GFF3315at 155.663 kb on + strand, within GFF3315at 155.684 kb on + strand, within GFF3315at 155.685 kb on - strand, within GFF3315at 155.685 kb on - strand, within GFF3315at 155.742 kb on - strand, within GFF3315at 155.858 kb on + strand, within GFF3315at 155.921 kb on + strand, within GFF3315at 155.921 kb on + strand, within GFF3315at 155.921 kb on + strand, within GFF3315at 155.922 kb on - strand, within GFF3315at 155.922 kb on - strand, within GFF3315at 155.954 kb on + strand, within GFF3315at 155.954 kb on + strand, within GFF3315at 155.955 kb on - strand, within GFF3315at 155.955 kb on - strand, within GFF3315at 155.961 kb on - strand, within GFF3315at 155.979 kb on - strand, within GFF3315at 156.188 kb on + strand, within GFF3315at 156.189 kb on - strand, within GFF3315at 156.189 kb on - strand, within GFF3315at 156.189 kb on - strand, within GFF3315at 156.189 kb on - strand, within GFF3315at 156.189 kb on - strand, within GFF3315at 156.189 kb on - strand, within GFF3315at 156.230 kb on + strand, within GFF3315at 156.230 kb on + strand, within GFF3315at 156.231 kb on - strand, within GFF3315at 156.231 kb on - strand, within GFF3315at 156.231 kb on - strand, within GFF3315at 156.326 kb on + strand, within GFF3315at 156.326 kb on + strand, within GFF3315at 156.326 kb on + strand, within GFF3315at 156.326 kb on + strand, within GFF3315at 156.332 kb on + strand, within GFF3315at 156.333 kb on - strand, within GFF3315at 156.333 kb on - strand, within GFF3315at 156.333 kb on - strand, within GFF3315at 156.333 kb on - strand, within GFF3315at 156.333 kb on - strand, within GFF3315at 156.558 kb on + strand, within GFF3316at 156.559 kb on - strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.568 kb on - strand, within GFF3316at 156.568 kb on - strand, within GFF3316at 156.568 kb on - strand, within GFF3316at 156.568 kb on - strand, within GFF3316at 156.639 kb on + strand, within GFF3316at 156.639 kb on + strand, within GFF3316at 156.639 kb on + strand, within GFF3316at 156.639 kb on + strand, within GFF3316at 156.640 kb on - strand, within GFF3316at 156.640 kb on - strand, within GFF3316at 156.708 kb on + strand, within GFF3316at 156.708 kb on + strand, within GFF3316at 156.709 kb on - strand, within GFF3316at 156.709 kb on - strand, within GFF3316at 156.795 kb on + strand, within GFF3316at 156.823 kb on - strand, within GFF3316at 156.880 kb on - strand, within GFF3316at 156.897 kb on + strand, within GFF3316at 156.897 kb on + strand, within GFF3316at 156.898 kb on - strand, within GFF3316at 156.898 kb on - strand, within GFF3316at 156.900 kb on - strand, within GFF3316at 156.906 kb on + strand, within GFF3316at 156.906 kb on + strand, within GFF3316at 156.906 kb on + strand, within GFF3316at 156.936 kb on + strand, within GFF3316at 156.938 kb on + strand, within GFF3316at 156.939 kb on - strand, within GFF3316at 156.939 kb on - strand, within GFF3316at 156.966 kb on + strand, within GFF3316at 156.966 kb on + strand, within GFF3316at 156.967 kb on - strand, within GFF3316at 157.276 kb on - strandat 157.609 kb on + strand, within GFF3317at 157.609 kb on + strand, within GFF3317at 157.609 kb on + strand, within GFF3317at 157.609 kb on + strand, within GFF3317at 157.610 kb on - strand, within GFF3317at 157.610 kb on - strand, within GFF3317at 157.610 kb on - strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.925 kb on - strand, within GFF3317at 157.925 kb on - strand, within GFF3317at 157.925 kb on - strand, within GFF3317at 158.023 kb on + strand, within GFF3317at 158.024 kb on - strand, within GFF3317at 158.024 kb on - strand, within GFF3317

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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155,645 + GFF3315 0.14 +0.0
155,663 + GFF3315 0.16 +1.0
155,684 + GFF3315 0.18 -0.7
155,685 - GFF3315 0.18 -0.6
155,685 - GFF3315 0.18 -1.1
155,742 - GFF3315 0.24 -0.9
155,858 + GFF3315 0.36 +0.2
155,921 + GFF3315 0.43 -0.9
155,921 + GFF3315 0.43 -1.3
155,921 + GFF3315 0.43 -0.5
155,922 - GFF3315 0.43 +0.2
155,922 - GFF3315 0.43 -0.1
155,954 + GFF3315 0.46 +0.0
155,954 + GFF3315 0.46 -1.7
155,955 - GFF3315 0.46 +0.5
155,955 - GFF3315 0.46 -0.1
155,961 - GFF3315 0.47 -0.7
155,979 - GFF3315 0.49 +0.4
156,188 + GFF3315 0.71 -0.1
156,189 - GFF3315 0.71 +1.4
156,189 - GFF3315 0.71 -0.8
156,189 - GFF3315 0.71 -0.2
156,189 - GFF3315 0.71 -0.5
156,189 - GFF3315 0.71 +1.3
156,189 - GFF3315 0.71 -0.6
156,230 + GFF3315 0.75 -0.1
156,230 + GFF3315 0.75 +0.8
156,231 - GFF3315 0.75 +1.4
156,231 - GFF3315 0.75 +0.5
156,231 - GFF3315 0.75 +1.2
156,326 + GFF3315 0.85 -0.7
156,326 + GFF3315 0.85 -0.4
156,326 + GFF3315 0.85 +0.4
156,326 + GFF3315 0.85 -0.9
156,332 + GFF3315 0.86 +0.0
156,333 - GFF3315 0.86 -0.4
156,333 - GFF3315 0.86 +1.1
156,333 - GFF3315 0.86 -0.7
156,333 - GFF3315 0.86 -2.5
156,333 - GFF3315 0.86 +0.0
156,558 + GFF3316 0.10 -1.2
156,559 - GFF3316 0.10 +0.0
156,567 + GFF3316 0.11 -0.5
156,567 + GFF3316 0.11 -0.5
156,567 + GFF3316 0.11 +1.1
156,567 + GFF3316 0.11 -1.0
156,567 + GFF3316 0.11 -0.3
156,568 - GFF3316 0.11 -1.4
156,568 - GFF3316 0.11 +0.9
156,568 - GFF3316 0.11 -0.4
156,568 - GFF3316 0.11 -0.9
156,639 + GFF3316 0.20 -0.7
156,639 + GFF3316 0.20 -1.0
156,639 + GFF3316 0.20 -0.9
156,639 + GFF3316 0.20 +0.3
156,640 - GFF3316 0.20 +0.1
156,640 - GFF3316 0.20 -1.7
156,708 + GFF3316 0.28 +0.3
156,708 + GFF3316 0.28 +0.7
156,709 - GFF3316 0.28 -1.6
156,709 - GFF3316 0.28 -0.5
156,795 + GFF3316 0.38 -0.2
156,823 - GFF3316 0.41 +0.3
156,880 - GFF3316 0.48 +0.9
156,897 + GFF3316 0.49 +0.7
156,897 + GFF3316 0.49 -0.7
156,898 - GFF3316 0.50 -0.5
156,898 - GFF3316 0.50 +0.1
156,900 - GFF3316 0.50 -0.4
156,906 + GFF3316 0.51 +0.3
156,906 + GFF3316 0.51 -0.3
156,906 + GFF3316 0.51 -0.4
156,936 + GFF3316 0.54 +0.4
156,938 + GFF3316 0.54 +0.1
156,939 - GFF3316 0.54 -0.0
156,939 - GFF3316 0.54 -0.2
156,966 + GFF3316 0.57 -1.5
156,966 + GFF3316 0.57 -0.6
156,967 - GFF3316 0.58 -1.0
157,276 - +0.2
157,609 + GFF3317 0.22 -0.5
157,609 + GFF3317 0.22 -0.2
157,609 + GFF3317 0.22 +0.2
157,609 + GFF3317 0.22 +0.2
157,610 - GFF3317 0.22 -0.2
157,610 - GFF3317 0.22 -0.6
157,610 - GFF3317 0.22 +0.8
157,924 + GFF3317 0.49 +0.2
157,924 + GFF3317 0.49 +0.9
157,924 + GFF3317 0.49 +0.4
157,924 + GFF3317 0.49 +0.2
157,924 + GFF3317 0.49 -0.5
157,924 + GFF3317 0.49 -0.2
157,925 - GFF3317 0.49 -1.7
157,925 - GFF3317 0.49 +0.1
157,925 - GFF3317 0.49 +1.0
158,023 + GFF3317 0.58 -0.2
158,024 - GFF3317 0.58 +0.1
158,024 - GFF3317 0.58 +0.4

Or see this region's nucleotide sequence