Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3259 and GFF3260 are separated by 329 nucleotides GFF3260 and GFF3261 overlap by 4 nucleotides GFF3261 and GFF3262 are separated by 10 nucleotides
GFF3259 - hypothetical protein, at 90,380 to 91,483
GFF3259
GFF3260 - hypothetical protein, at 91,813 to 92,625
GFF3260
GFF3261 - Vitamin B12 import ATP-binding protein BtuD, at 92,622 to 93,446
GFF3261
GFF3262 - hypothetical protein, at 93,457 to 94,266
GFF3262
Position (kb) 91
92
93 Strain fitness (log2 ratio) -1
0
1
2 at 90.851 kb on + strand, within GFF3259 at 90.942 kb on - strand, within GFF3259 at 90.942 kb on - strand, within GFF3259 at 90.942 kb on - strand, within GFF3259 at 91.894 kb on + strand at 91.894 kb on + strand at 91.894 kb on + strand at 91.895 kb on - strand, within GFF3260 at 92.017 kb on + strand, within GFF3260 at 92.158 kb on - strand, within GFF3260 at 92.158 kb on - strand, within GFF3260 at 92.504 kb on - strand, within GFF3260 at 92.530 kb on + strand, within GFF3260 at 92.530 kb on + strand, within GFF3260 at 92.531 kb on - strand, within GFF3260 at 92.658 kb on + strand at 92.659 kb on - strand at 92.659 kb on - strand at 92.866 kb on - strand, within GFF3261 at 92.866 kb on - strand, within GFF3261 at 93.030 kb on + strand, within GFF3261 at 93.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 90,851 + GFF3259 0.43 -0.5 90,942 - GFF3259 0.51 -1.7 90,942 - GFF3259 0.51 -1.0 90,942 - GFF3259 0.51 -0.7 91,894 + +0.6 91,894 + +0.8 91,894 + +0.0 91,895 - GFF3260 0.10 +0.2 92,017 + GFF3260 0.25 -1.0 92,158 - GFF3260 0.42 +1.0 92,158 - GFF3260 0.42 +0.8 92,504 - GFF3260 0.85 +1.0 92,530 + GFF3260 0.88 +0.9 92,530 + GFF3260 0.88 +1.0 92,531 - GFF3260 0.88 -0.1 92,658 + +0.4 92,659 - -0.5 92,659 - -0.3 92,866 - GFF3261 0.30 -0.3 92,866 - GFF3261 0.30 -0.9 93,030 + GFF3261 0.49 +2.5 93,509 - -0.3
Or see this region's nucleotide sequence