Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3204 and GFF3205 overlap by 34 nucleotides GFF3205 and GFF3206 overlap by 1 nucleotides GFF3206 and GFF3207 are separated by 71 nucleotides GFF3207 and GFF3208 are separated by 133 nucleotides
GFF3204 - hypothetical protein, at 29,017 to 30,993
GFF3204
GFF3205 - Fructose import ATP-binding protein FrcA, at 30,960 to 31,718
GFF3205
GFF3206 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 31,718 to 32,419
GFF3206
GFF3207 - hypothetical protein, at 32,491 to 32,778
GFF3207
GFF3208 - Transcriptional regulatory protein QseB, at 32,912 to 33,583
GFF3208
Position (kb) 31
32
33 Strain fitness (log2 ratio) -2
-1
0
1 at 30.797 kb on - strand at 30.814 kb on + strand at 30.814 kb on + strand at 30.815 kb on - strand at 30.815 kb on - strand at 31.098 kb on + strand, within GFF3205 at 31.748 kb on + strand at 31.928 kb on + strand, within GFF3206 at 31.928 kb on + strand, within GFF3206 at 31.928 kb on + strand, within GFF3206 at 31.929 kb on - strand, within GFF3206 at 31.929 kb on - strand, within GFF3206 at 32.067 kb on - strand, within GFF3206 at 32.067 kb on - strand, within GFF3206 at 32.067 kb on - strand, within GFF3206 at 32.067 kb on - strand, within GFF3206 at 32.145 kb on - strand, within GFF3206 at 32.917 kb on + strand at 32.918 kb on - strand at 32.918 kb on - strand at 33.267 kb on - strand, within GFF3208 at 33.397 kb on - strand, within GFF3208
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 30,797 - +0.0 30,814 + +0.3 30,814 + +0.8 30,815 - +0.9 30,815 - +0.0 31,098 + GFF3205 0.18 +0.0 31,748 + -0.3 31,928 + GFF3206 0.30 -0.3 31,928 + GFF3206 0.30 -0.1 31,928 + GFF3206 0.30 -1.8 31,929 - GFF3206 0.30 +0.3 31,929 - GFF3206 0.30 -0.4 32,067 - GFF3206 0.50 -0.7 32,067 - GFF3206 0.50 +0.1 32,067 - GFF3206 0.50 -0.2 32,067 - GFF3206 0.50 -0.5 32,145 - GFF3206 0.61 -0.1 32,917 + +0.3 32,918 - -0.0 32,918 - +0.9 33,267 - GFF3208 0.53 +0.7 33,397 - GFF3208 0.72 -0.8
Or see this region's nucleotide sequence