Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3200 and GFF3201 are separated by 21 nucleotides GFF3201 and GFF3202 are separated by 264 nucleotides GFF3202 and GFF3203 are separated by 93 nucleotides
GFF3200 - Acylamidase, at 24,644 to 26,050
GFF3200
GFF3201 - putative HTH-type transcriptional regulator, at 26,072 to 26,626
GFF3201
GFF3202 - hypothetical protein, at 26,891 to 27,712
GFF3202
GFF3203 - hypothetical protein, at 27,806 to 28,969
GFF3203
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1 at 25.964 kb on + strand at 25.964 kb on + strand at 25.964 kb on + strand at 25.965 kb on - strand at 26.112 kb on + strand at 26.113 kb on - strand at 26.113 kb on - strand at 26.113 kb on - strand at 26.172 kb on + strand, within GFF3201 at 26.292 kb on + strand, within GFF3201 at 26.293 kb on - strand, within GFF3201 at 26.293 kb on - strand, within GFF3201 at 26.293 kb on - strand, within GFF3201 at 26.379 kb on + strand, within GFF3201 at 26.380 kb on - strand, within GFF3201 at 26.514 kb on + strand, within GFF3201 at 26.563 kb on + strand, within GFF3201 at 26.563 kb on + strand, within GFF3201 at 26.666 kb on - strand at 26.866 kb on + strand at 26.866 kb on + strand at 26.867 kb on - strand at 26.942 kb on + strand at 26.942 kb on + strand at 26.942 kb on + strand at 26.942 kb on + strand at 26.943 kb on - strand at 26.945 kb on - strand at 27.218 kb on + strand, within GFF3202 at 27.218 kb on + strand, within GFF3202 at 27.219 kb on - strand, within GFF3202 at 27.219 kb on - strand, within GFF3202 at 27.221 kb on + strand, within GFF3202 at 27.221 kb on + strand, within GFF3202 at 27.222 kb on - strand, within GFF3202 at 27.461 kb on + strand, within GFF3202 at 27.515 kb on + strand, within GFF3202 at 27.515 kb on + strand, within GFF3202 at 27.515 kb on + strand, within GFF3202 at 27.515 kb on + strand, within GFF3202 at 27.515 kb on + strand, within GFF3202 at 27.516 kb on - strand, within GFF3202 at 27.516 kb on - strand, within GFF3202 at 27.516 kb on - strand, within GFF3202 at 27.516 kb on - strand, within GFF3202 at 27.669 kb on - strand at 28.259 kb on + strand, within GFF3203 at 28.289 kb on + strand, within GFF3203 at 28.289 kb on + strand, within GFF3203 at 28.290 kb on - strand, within GFF3203 at 28.376 kb on + strand, within GFF3203 at 28.376 kb on + strand, within GFF3203 at 28.376 kb on + strand, within GFF3203 at 28.377 kb on - strand, within GFF3203 at 28.392 kb on - strand, within GFF3203 at 28.455 kb on + strand, within GFF3203 at 28.456 kb on - strand, within GFF3203 at 28.457 kb on + strand, within GFF3203 at 28.481 kb on + strand, within GFF3203 at 28.481 kb on + strand, within GFF3203 at 28.481 kb on + strand, within GFF3203 at 28.482 kb on - strand, within GFF3203 at 28.494 kb on - strand, within GFF3203 at 28.494 kb on - strand, within GFF3203 at 28.494 kb on - strand, within GFF3203 at 28.509 kb on + strand, within GFF3203 at 28.529 kb on + strand, within GFF3203 at 28.664 kb on - strand, within GFF3203 at 28.689 kb on - strand, within GFF3203 at 28.707 kb on + strand, within GFF3203
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 25,964 + +0.1 25,964 + +0.3 25,964 + +0.4 25,965 - +0.1 26,112 + -1.2 26,113 - -0.3 26,113 - -2.1 26,113 - -0.0 26,172 + GFF3201 0.18 -0.1 26,292 + GFF3201 0.40 +0.0 26,293 - GFF3201 0.40 +1.2 26,293 - GFF3201 0.40 -0.8 26,293 - GFF3201 0.40 -0.5 26,379 + GFF3201 0.55 -0.7 26,380 - GFF3201 0.55 +0.7 26,514 + GFF3201 0.80 +0.3 26,563 + GFF3201 0.88 -0.4 26,563 + GFF3201 0.88 +0.1 26,666 - -0.6 26,866 + +0.3 26,866 + +1.0 26,867 - -1.0 26,942 + +0.5 26,942 + +0.4 26,942 + +1.6 26,942 + +0.6 26,943 - +0.7 26,945 - -0.2 27,218 + GFF3202 0.40 -0.1 27,218 + GFF3202 0.40 +1.5 27,219 - GFF3202 0.40 -0.1 27,219 - GFF3202 0.40 +1.2 27,221 + GFF3202 0.40 -1.0 27,221 + GFF3202 0.40 +0.0 27,222 - GFF3202 0.40 +0.6 27,461 + GFF3202 0.69 +1.0 27,515 + GFF3202 0.76 -0.1 27,515 + GFF3202 0.76 -0.5 27,515 + GFF3202 0.76 -0.5 27,515 + GFF3202 0.76 -0.1 27,515 + GFF3202 0.76 -0.6 27,516 - GFF3202 0.76 -0.7 27,516 - GFF3202 0.76 -0.3 27,516 - GFF3202 0.76 -0.2 27,516 - GFF3202 0.76 -0.9 27,669 - -0.8 28,259 + GFF3203 0.39 +0.2 28,289 + GFF3203 0.41 -0.6 28,289 + GFF3203 0.41 +1.2 28,290 - GFF3203 0.42 +0.0 28,376 + GFF3203 0.49 -1.7 28,376 + GFF3203 0.49 -1.0 28,376 + GFF3203 0.49 +0.1 28,377 - GFF3203 0.49 -0.7 28,392 - GFF3203 0.50 -0.6 28,455 + GFF3203 0.56 +0.2 28,456 - GFF3203 0.56 +0.1 28,457 + GFF3203 0.56 +0.4 28,481 + GFF3203 0.58 +0.6 28,481 + GFF3203 0.58 -0.8 28,481 + GFF3203 0.58 +0.3 28,482 - GFF3203 0.58 +0.0 28,494 - GFF3203 0.59 +1.0 28,494 - GFF3203 0.59 +0.0 28,494 - GFF3203 0.59 +0.3 28,509 + GFF3203 0.60 +0.5 28,529 + GFF3203 0.62 -0.2 28,664 - GFF3203 0.74 +0.9 28,689 - GFF3203 0.76 +0.2 28,707 + GFF3203 0.77 +0.9
Or see this region's nucleotide sequence