Strain Fitness in Xanthobacter sp. DMC5 around GFF318

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF317 and GFF318 overlap by 17 nucleotidesGFF318 and GFF319 are separated by 11 nucleotides GFF317 - hypothetical protein, at 327,644 to 328,879 GFF317 GFF318 - ATP-dependent Clp protease proteolytic subunit, at 328,863 to 329,792 GFF318 GFF319 - hypothetical protein, at 329,804 to 331,096 GFF319 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1 2at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.107 kb on - strand, within GFF317at 328.107 kb on - strand, within GFF317at 328.107 kb on - strand, within GFF317at 328.112 kb on + strand, within GFF317at 328.113 kb on - strand, within GFF317at 328.157 kb on - strand, within GFF317at 328.178 kb on - strand, within GFF317at 328.230 kb on + strand, within GFF317at 328.230 kb on + strand, within GFF317at 328.231 kb on - strand, within GFF317at 328.231 kb on - strand, within GFF317at 328.231 kb on - strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.335 kb on - strand, within GFF317at 328.335 kb on - strand, within GFF317at 328.418 kb on + strand, within GFF317at 328.418 kb on + strand, within GFF317at 328.418 kb on + strand, within GFF317at 328.419 kb on - strand, within GFF317at 328.419 kb on - strand, within GFF317at 328.419 kb on - strand, within GFF317at 328.461 kb on - strand, within GFF317at 328.583 kb on + strand, within GFF317at 328.583 kb on + strand, within GFF317at 328.583 kb on + strand, within GFF317at 328.877 kb on + strandat 328.877 kb on + strandat 328.877 kb on + strandat 329.226 kb on + strand, within GFF318at 329.226 kb on + strand, within GFF318at 329.226 kb on + strand, within GFF318at 329.227 kb on - strand, within GFF318at 329.227 kb on - strand, within GFF318at 329.227 kb on - strand, within GFF318at 329.227 kb on - strand, within GFF318at 329.448 kb on + strand, within GFF318at 329.449 kb on - strand, within GFF318at 329.508 kb on + strand, within GFF318at 329.508 kb on + strand, within GFF318at 329.508 kb on + strand, within GFF318at 329.508 kb on + strand, within GFF318at 329.509 kb on - strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.942 kb on + strand, within GFF319at 329.943 kb on - strand, within GFF319at 329.943 kb on - strand, within GFF319at 329.986 kb on + strand, within GFF319at 329.987 kb on - strand, within GFF319at 329.987 kb on - strand, within GFF319at 330.125 kb on + strand, within GFF319at 330.125 kb on + strand, within GFF319at 330.126 kb on - strand, within GFF319at 330.242 kb on + strand, within GFF319at 330.243 kb on - strand, within GFF319at 330.356 kb on + strand, within GFF319at 330.461 kb on + strand, within GFF319at 330.461 kb on + strand, within GFF319at 330.462 kb on - strand, within GFF319at 330.462 kb on - strand, within GFF319at 330.462 kb on - strand, within GFF319at 330.602 kb on + strand, within GFF319at 330.602 kb on + strand, within GFF319at 330.617 kb on + strand, within GFF319at 330.618 kb on - strand, within GFF319at 330.618 kb on - strand, within GFF319at 330.618 kb on - strand, within GFF319at 330.618 kb on - strand, within GFF319at 330.725 kb on + strand, within GFF319at 330.725 kb on + strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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328,106 + GFF317 0.37 +1.5
328,106 + GFF317 0.37 -0.4
328,106 + GFF317 0.37 +0.1
328,106 + GFF317 0.37 -0.3
328,106 + GFF317 0.37 -0.2
328,107 - GFF317 0.37 -0.2
328,107 - GFF317 0.37 +0.1
328,107 - GFF317 0.37 -0.1
328,112 + GFF317 0.38 +0.1
328,113 - GFF317 0.38 +0.8
328,157 - GFF317 0.42 -0.0
328,178 - GFF317 0.43 -0.5
328,230 + GFF317 0.47 +1.4
328,230 + GFF317 0.47 -0.5
328,231 - GFF317 0.47 +0.4
328,231 - GFF317 0.47 +0.4
328,231 - GFF317 0.47 +0.6
328,334 + GFF317 0.56 -0.5
328,334 + GFF317 0.56 -1.0
328,334 + GFF317 0.56 -0.9
328,334 + GFF317 0.56 +0.1
328,335 - GFF317 0.56 -1.4
328,335 - GFF317 0.56 -0.7
328,418 + GFF317 0.63 -0.8
328,418 + GFF317 0.63 +1.0
328,418 + GFF317 0.63 -1.5
328,419 - GFF317 0.63 +0.1
328,419 - GFF317 0.63 +0.1
328,419 - GFF317 0.63 -0.7
328,461 - GFF317 0.66 +0.1
328,583 + GFF317 0.76 +1.2
328,583 + GFF317 0.76 +0.4
328,583 + GFF317 0.76 +0.3
328,877 + -0.1
328,877 + -0.2
328,877 + +0.8
329,226 + GFF318 0.39 -2.1
329,226 + GFF318 0.39 -0.2
329,226 + GFF318 0.39 -0.1
329,227 - GFF318 0.39 +0.4
329,227 - GFF318 0.39 +0.4
329,227 - GFF318 0.39 -0.4
329,227 - GFF318 0.39 +0.3
329,448 + GFF318 0.63 -0.3
329,449 - GFF318 0.63 -0.2
329,508 + GFF318 0.69 +0.9
329,508 + GFF318 0.69 -0.5
329,508 + GFF318 0.69 -0.8
329,508 + GFF318 0.69 +0.3
329,509 - GFF318 0.69 -0.9
329,510 + GFF318 0.70 +0.4
329,510 + GFF318 0.70 -0.4
329,510 + GFF318 0.70 +0.2
329,510 + GFF318 0.70 +0.8
329,510 + GFF318 0.70 +0.7
329,510 + GFF318 0.70 -0.6
329,511 - GFF318 0.70 +0.4
329,511 - GFF318 0.70 -0.2
329,511 - GFF318 0.70 +0.0
329,511 - GFF318 0.70 -0.2
329,511 - GFF318 0.70 +0.2
329,511 - GFF318 0.70 -0.5
329,942 + GFF319 0.11 +0.6
329,943 - GFF319 0.11 +1.2
329,943 - GFF319 0.11 +0.8
329,986 + GFF319 0.14 +0.3
329,987 - GFF319 0.14 -0.2
329,987 - GFF319 0.14 +0.9
330,125 + GFF319 0.25 -0.5
330,125 + GFF319 0.25 -0.2
330,126 - GFF319 0.25 +0.0
330,242 + GFF319 0.34 +0.0
330,243 - GFF319 0.34 -0.3
330,356 + GFF319 0.43 +2.6
330,461 + GFF319 0.51 +1.4
330,461 + GFF319 0.51 +0.1
330,462 - GFF319 0.51 +0.2
330,462 - GFF319 0.51 -0.2
330,462 - GFF319 0.51 +0.1
330,602 + GFF319 0.62 -0.9
330,602 + GFF319 0.62 -0.6
330,617 + GFF319 0.63 +0.0
330,618 - GFF319 0.63 +1.1
330,618 - GFF319 0.63 +0.1
330,618 - GFF319 0.63 -0.4
330,618 - GFF319 0.63 -0.2
330,725 + GFF319 0.71 +1.0
330,725 + GFF319 0.71 -0.2
330,726 - GFF319 0.71 +0.0
330,726 - GFF319 0.71 +0.2
330,726 - GFF319 0.71 +1.8
330,726 - GFF319 0.71 +0.7
330,726 - GFF319 0.71 +0.3
330,764 + GFF319 0.74 -0.6
330,764 + GFF319 0.74 +0.0
330,764 + GFF319 0.74 +0.0
330,764 + GFF319 0.74 +0.7
330,764 + GFF319 0.74 +0.4
330,765 - GFF319 0.74 -0.2
330,765 - GFF319 0.74 +0.9
330,765 - GFF319 0.74 +0.0
330,765 - GFF319 0.74 +0.6
330,765 - GFF319 0.74 +2.4
330,765 - GFF319 0.74 +0.6

Or see this region's nucleotide sequence