Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3130 and GFF3131 are separated by 41 nucleotides GFF3131 and GFF3132 are separated by 195 nucleotides
GFF3130 - Aminopeptidase N, at 863,711 to 866,341
GFF3130
GFF3131 - hypothetical protein, at 866,383 to 867,243
GFF3131
GFF3132 - hypothetical protein, at 867,439 to 868,260
GFF3132
Position (kb) 866
867
868 Strain fitness (log2 ratio) -1
0
1
2 at 865.458 kb on + strand, within GFF3130 at 865.459 kb on - strand, within GFF3130 at 865.497 kb on + strand, within GFF3130 at 865.497 kb on + strand, within GFF3130 at 865.497 kb on + strand, within GFF3130 at 865.497 kb on + strand, within GFF3130 at 865.497 kb on + strand, within GFF3130 at 865.498 kb on - strand, within GFF3130 at 865.498 kb on - strand, within GFF3130 at 865.498 kb on - strand, within GFF3130 at 865.588 kb on - strand, within GFF3130 at 865.680 kb on + strand, within GFF3130 at 865.680 kb on + strand, within GFF3130 at 865.680 kb on + strand, within GFF3130 at 865.680 kb on + strand, within GFF3130 at 865.681 kb on - strand, within GFF3130 at 865.681 kb on - strand, within GFF3130 at 865.681 kb on - strand, within GFF3130 at 865.767 kb on + strand, within GFF3130 at 865.768 kb on - strand, within GFF3130 at 865.768 kb on - strand, within GFF3130 at 865.803 kb on + strand, within GFF3130 at 865.803 kb on + strand, within GFF3130 at 865.804 kb on - strand, within GFF3130 at 865.804 kb on - strand, within GFF3130 at 865.804 kb on - strand, within GFF3130 at 865.804 kb on - strand, within GFF3130 at 865.932 kb on + strand, within GFF3130 at 865.935 kb on + strand, within GFF3130 at 865.935 kb on + strand, within GFF3130 at 865.935 kb on + strand, within GFF3130 at 865.935 kb on + strand, within GFF3130 at 865.935 kb on + strand, within GFF3130 at 865.936 kb on - strand, within GFF3130 at 866.301 kb on + strand at 866.384 kb on + strand at 866.409 kb on + strand at 866.512 kb on + strand, within GFF3131 at 866.513 kb on - strand, within GFF3131 at 867.309 kb on + strand at 867.340 kb on + strand at 867.340 kb on + strand at 867.441 kb on - strand at 867.441 kb on - strand at 867.843 kb on + strand, within GFF3132 at 867.843 kb on + strand, within GFF3132 at 867.844 kb on - strand, within GFF3132 at 867.844 kb on - strand, within GFF3132 at 867.844 kb on - strand, within GFF3132 at 867.948 kb on - strand, within GFF3132
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 865,458 + GFF3130 0.66 -0.5 865,459 - GFF3130 0.66 +0.6 865,497 + GFF3130 0.68 -0.6 865,497 + GFF3130 0.68 +0.3 865,497 + GFF3130 0.68 -1.3 865,497 + GFF3130 0.68 -0.0 865,497 + GFF3130 0.68 -0.7 865,498 - GFF3130 0.68 +0.8 865,498 - GFF3130 0.68 +1.1 865,498 - GFF3130 0.68 -0.3 865,588 - GFF3130 0.71 -0.2 865,680 + GFF3130 0.75 -0.6 865,680 + GFF3130 0.75 +0.1 865,680 + GFF3130 0.75 -0.2 865,680 + GFF3130 0.75 +1.4 865,681 - GFF3130 0.75 +2.0 865,681 - GFF3130 0.75 +0.6 865,681 - GFF3130 0.75 -1.5 865,767 + GFF3130 0.78 -0.8 865,768 - GFF3130 0.78 -0.1 865,768 - GFF3130 0.78 -0.9 865,803 + GFF3130 0.80 +0.1 865,803 + GFF3130 0.80 +0.3 865,804 - GFF3130 0.80 -0.9 865,804 - GFF3130 0.80 -0.4 865,804 - GFF3130 0.80 +1.2 865,804 - GFF3130 0.80 +1.0 865,932 + GFF3130 0.84 -0.5 865,935 + GFF3130 0.85 +0.5 865,935 + GFF3130 0.85 +1.1 865,935 + GFF3130 0.85 +1.3 865,935 + GFF3130 0.85 -0.4 865,935 + GFF3130 0.85 +0.0 865,936 - GFF3130 0.85 +0.5 866,301 + +0.8 866,384 + +0.5 866,409 + -0.9 866,512 + GFF3131 0.15 -0.6 866,513 - GFF3131 0.15 +1.2 867,309 + -0.4 867,340 + +0.3 867,340 + +1.0 867,441 - +0.4 867,441 - -0.2 867,843 + GFF3132 0.49 +0.6 867,843 + GFF3132 0.49 -0.8 867,844 - GFF3132 0.49 -0.8 867,844 - GFF3132 0.49 +0.0 867,844 - GFF3132 0.49 +0.3 867,948 - GFF3132 0.62 +0.3
Or see this region's nucleotide sequence