Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3123 and GFF3124 are separated by 37 nucleotides GFF3124 and GFF3125 overlap by 4 nucleotides GFF3125 and GFF3126 are separated by 140 nucleotides
GFF3123 - hypothetical protein, at 854,040 to 855,047
GFF3123
GFF3124 - hypothetical protein, at 855,085 to 855,696
GFF3124
GFF3125 - hypothetical protein, at 855,693 to 856,322
GFF3125
GFF3126 - Periplasmic serine endoprotease DegP, at 856,463 to 858,046
GFF3126
Position (kb) 855
856
857 Strain fitness (log2 ratio) -1
0
1 at 855.000 kb on + strand at 855.000 kb on + strand at 855.001 kb on - strand at 855.001 kb on - strand at 855.064 kb on + strand at 855.064 kb on + strand at 855.064 kb on + strand at 855.065 kb on - strand at 855.065 kb on - strand at 855.165 kb on + strand, within GFF3124 at 855.484 kb on + strand, within GFF3124 at 855.662 kb on - strand at 855.662 kb on - strand at 855.662 kb on - strand at 855.785 kb on + strand, within GFF3125 at 855.804 kb on + strand, within GFF3125 at 855.805 kb on - strand, within GFF3125 at 856.095 kb on + strand, within GFF3125 at 856.095 kb on + strand, within GFF3125 at 856.096 kb on - strand, within GFF3125 at 856.167 kb on + strand, within GFF3125 at 856.167 kb on + strand, within GFF3125 at 856.168 kb on - strand, within GFF3125 at 856.363 kb on + strand at 856.364 kb on - strand at 856.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 855,000 + +0.2 855,000 + +1.7 855,001 - +0.6 855,001 - -0.1 855,064 + -0.1 855,064 + +1.6 855,064 + -0.7 855,065 - -1.5 855,065 - +0.7 855,165 + GFF3124 0.13 -1.3 855,484 + GFF3124 0.65 -0.2 855,662 - -0.5 855,662 - +1.3 855,662 - +1.3 855,785 + GFF3125 0.15 -1.0 855,804 + GFF3125 0.18 -0.4 855,805 - GFF3125 0.18 +0.5 856,095 + GFF3125 0.64 +0.0 856,095 + GFF3125 0.64 +1.1 856,096 - GFF3125 0.64 +0.8 856,167 + GFF3125 0.75 +0.2 856,167 + GFF3125 0.75 +0.6 856,168 - GFF3125 0.75 +0.4 856,363 + +0.8 856,364 - +1.0 856,364 - -0.2
Or see this region's nucleotide sequence