Strain Fitness in Xanthobacter sp. DMC5 around GFF3120

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3118 and GFF3119 are separated by 140 nucleotidesGFF3119 and GFF3120 overlap by 104 nucleotidesGFF3120 and GFF3121 are separated by 123 nucleotides GFF3118 - hypothetical protein, at 847,016 to 847,693 GFF3118 GFF3119 - hypothetical protein, at 847,834 to 848,316 GFF3119 GFF3120 - Polyamine aminopropyltransferase, at 848,213 to 850,858 GFF3120 GFF3121 - hypothetical protein, at 850,982 to 852,916 GFF3121 Position (kb) 848 849 850 851Strain fitness (log2 ratio) -1 0 1 2 3at 847.241 kb on - strand, within GFF3118at 847.416 kb on - strand, within GFF3118at 847.416 kb on - strand, within GFF3118at 847.583 kb on + strand, within GFF3118at 847.584 kb on - strand, within GFF3118at 847.663 kb on + strandat 847.664 kb on - strandat 848.116 kb on + strand, within GFF3119at 848.116 kb on + strand, within GFF3119at 848.116 kb on + strand, within GFF3119at 848.116 kb on + strand, within GFF3119at 848.117 kb on - strand, within GFF3119at 848.117 kb on - strand, within GFF3119at 848.117 kb on - strand, within GFF3119at 848.225 kb on + strandat 848.226 kb on - strandat 848.285 kb on + strandat 848.285 kb on + strandat 848.286 kb on - strandat 848.353 kb on - strandat 848.464 kb on + strandat 848.465 kb on - strandat 848.466 kb on + strandat 848.467 kb on - strandat 848.467 kb on - strandat 848.488 kb on - strand, within GFF3120at 849.048 kb on + strand, within GFF3120at 849.048 kb on + strand, within GFF3120at 849.048 kb on + strand, within GFF3120at 849.049 kb on - strand, within GFF3120at 849.049 kb on - strand, within GFF3120at 849.049 kb on - strand, within GFF3120at 849.072 kb on + strand, within GFF3120at 849.169 kb on - strand, within GFF3120at 849.579 kb on + strand, within GFF3120at 849.579 kb on + strand, within GFF3120at 849.580 kb on - strand, within GFF3120at 849.580 kb on - strand, within GFF3120at 849.607 kb on - strand, within GFF3120at 849.607 kb on - strand, within GFF3120at 849.607 kb on - strand, within GFF3120at 849.673 kb on + strand, within GFF3120at 849.673 kb on + strand, within GFF3120at 849.674 kb on - strand, within GFF3120at 849.970 kb on - strand, within GFF3120at 850.002 kb on + strand, within GFF3120at 850.029 kb on + strand, within GFF3120at 850.029 kb on + strand, within GFF3120at 850.029 kb on + strand, within GFF3120at 850.030 kb on - strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.333 kb on - strand, within GFF3120at 850.333 kb on - strand, within GFF3120at 850.333 kb on - strand, within GFF3120at 850.377 kb on - strand, within GFF3120at 850.578 kb on + strand, within GFF3120at 850.732 kb on - strandat 850.805 kb on + strandat 851.104 kb on - strandat 851.280 kb on + strand, within GFF3121at 851.280 kb on + strand, within GFF3121at 851.280 kb on + strand, within GFF3121at 851.280 kb on + strand, within GFF3121at 851.281 kb on - strand, within GFF3121at 851.281 kb on - strand, within GFF3121at 851.400 kb on + strand, within GFF3121at 851.400 kb on + strand, within GFF3121at 851.400 kb on + strand, within GFF3121at 851.401 kb on - strand, within GFF3121at 851.401 kb on - strand, within GFF3121at 851.526 kb on + strand, within GFF3121at 851.526 kb on + strand, within GFF3121at 851.526 kb on + strand, within GFF3121at 851.649 kb on + strand, within GFF3121at 851.649 kb on + strand, within GFF3121at 851.649 kb on + strand, within GFF3121at 851.650 kb on - strand, within GFF3121at 851.650 kb on - strand, within GFF3121at 851.650 kb on - strand, within GFF3121at 851.689 kb on - strand, within GFF3121at 851.689 kb on - strand, within GFF3121at 851.689 kb on - strand, within GFF3121at 851.763 kb on + strand, within GFF3121at 851.764 kb on - strand, within GFF3121at 851.764 kb on - strand, within GFF3121at 851.764 kb on - strand, within GFF3121at 851.788 kb on - strand, within GFF3121at 851.814 kb on + strand, within GFF3121at 851.815 kb on - strand, within GFF3121

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
847,241 - GFF3118 0.33 +0.3
847,416 - GFF3118 0.59 -0.3
847,416 - GFF3118 0.59 +0.6
847,583 + GFF3118 0.84 +0.1
847,584 - GFF3118 0.84 -1.1
847,663 + -1.2
847,664 - -1.2
848,116 + GFF3119 0.58 +0.0
848,116 + GFF3119 0.58 +0.3
848,116 + GFF3119 0.58 +0.6
848,116 + GFF3119 0.58 +3.0
848,117 - GFF3119 0.59 +1.2
848,117 - GFF3119 0.59 +0.7
848,117 - GFF3119 0.59 +0.1
848,225 + -0.1
848,226 - -0.6
848,285 + +0.7
848,285 + -1.1
848,286 - +0.1
848,353 - -0.8
848,464 + +0.6
848,465 - -0.8
848,466 + +0.4
848,467 - +0.1
848,467 - +1.0
848,488 - GFF3120 0.10 -0.1
849,048 + GFF3120 0.32 +0.7
849,048 + GFF3120 0.32 -0.3
849,048 + GFF3120 0.32 +0.8
849,049 - GFF3120 0.32 -1.0
849,049 - GFF3120 0.32 +0.1
849,049 - GFF3120 0.32 -0.4
849,072 + GFF3120 0.32 +0.6
849,169 - GFF3120 0.36 +0.7
849,579 + GFF3120 0.52 +0.6
849,579 + GFF3120 0.52 -0.5
849,580 - GFF3120 0.52 +0.6
849,580 - GFF3120 0.52 +0.2
849,607 - GFF3120 0.53 +1.0
849,607 - GFF3120 0.53 +0.5
849,607 - GFF3120 0.53 -0.1
849,673 + GFF3120 0.55 +0.1
849,673 + GFF3120 0.55 +0.1
849,674 - GFF3120 0.55 -0.8
849,970 - GFF3120 0.66 -0.3
850,002 + GFF3120 0.68 -0.4
850,029 + GFF3120 0.69 +1.4
850,029 + GFF3120 0.69 +0.2
850,029 + GFF3120 0.69 +0.7
850,030 - GFF3120 0.69 -0.5
850,332 + GFF3120 0.80 -0.2
850,332 + GFF3120 0.80 +0.0
850,332 + GFF3120 0.80 -0.8
850,332 + GFF3120 0.80 -0.6
850,332 + GFF3120 0.80 -0.1
850,333 - GFF3120 0.80 -0.8
850,333 - GFF3120 0.80 +0.1
850,333 - GFF3120 0.80 -1.0
850,377 - GFF3120 0.82 +0.2
850,578 + GFF3120 0.89 -0.6
850,732 - +1.0
850,805 + +0.7
851,104 - +1.4
851,280 + GFF3121 0.15 -0.3
851,280 + GFF3121 0.15 +0.1
851,280 + GFF3121 0.15 +1.1
851,280 + GFF3121 0.15 +0.8
851,281 - GFF3121 0.15 -0.5
851,281 - GFF3121 0.15 -0.6
851,400 + GFF3121 0.22 -0.5
851,400 + GFF3121 0.22 -0.0
851,400 + GFF3121 0.22 +0.2
851,401 - GFF3121 0.22 -0.7
851,401 - GFF3121 0.22 -0.3
851,526 + GFF3121 0.28 +1.5
851,526 + GFF3121 0.28 +0.2
851,526 + GFF3121 0.28 +1.1
851,649 + GFF3121 0.34 -0.6
851,649 + GFF3121 0.34 -0.5
851,649 + GFF3121 0.34 -0.9
851,650 - GFF3121 0.35 -0.3
851,650 - GFF3121 0.35 -0.3
851,650 - GFF3121 0.35 -0.4
851,689 - GFF3121 0.37 +0.6
851,689 - GFF3121 0.37 +0.1
851,689 - GFF3121 0.37 -0.6
851,763 + GFF3121 0.40 +0.7
851,764 - GFF3121 0.40 -0.5
851,764 - GFF3121 0.40 -0.5
851,764 - GFF3121 0.40 +0.3
851,788 - GFF3121 0.42 -0.4
851,814 + GFF3121 0.43 +0.4
851,815 - GFF3121 0.43 +0.2

Or see this region's nucleotide sequence