Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3104 and GFF3105 are separated by 115 nucleotides GFF3105 and GFF3106 are separated by 3 nucleotides GFF3106 and GFF3107 are separated by 8 nucleotides
GFF3104 - Biosynthetic peptidoglycan transglycosylase, at 832,187 to 834,460
GFF3104
GFF3105 - hypothetical protein, at 834,576 to 835,172
GFF3105
GFF3106 - hypothetical protein, at 835,176 to 835,820
GFF3106
GFF3107 - Secretin XpsD, at 835,829 to 838,057
GFF3107
Position (kb) 834
835
836 Strain fitness (log2 ratio) -1
0
1
2 at 833.706 kb on + strand, within GFF3104 at 833.982 kb on + strand, within GFF3104 at 833.983 kb on - strand, within GFF3104 at 834.283 kb on - strand at 834.475 kb on + strand at 834.476 kb on - strand at 834.476 kb on - strand at 834.477 kb on + strand at 834.478 kb on - strand at 834.478 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.481 kb on - strand at 834.578 kb on - strand at 834.722 kb on + strand, within GFF3105 at 834.878 kb on - strand, within GFF3105 at 834.935 kb on - strand, within GFF3105 at 835.021 kb on + strand, within GFF3105 at 835.303 kb on + strand, within GFF3106 at 835.534 kb on + strand, within GFF3106 at 835.534 kb on + strand, within GFF3106 at 835.534 kb on + strand, within GFF3106 at 835.534 kb on + strand, within GFF3106 at 835.535 kb on - strand, within GFF3106 at 835.535 kb on - strand, within GFF3106 at 835.535 kb on - strand, within GFF3106 at 835.535 kb on - strand, within GFF3106
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 833,706 + GFF3104 0.67 +0.7 833,982 + GFF3104 0.79 +1.0 833,983 - GFF3104 0.79 +2.1 834,283 - +1.4 834,475 + +1.8 834,476 - +1.1 834,476 - +0.1 834,477 + +2.3 834,478 - +0.2 834,478 - +0.2 834,479 + +0.9 834,479 + +2.2 834,479 + +1.2 834,480 - -0.1 834,480 - +2.3 834,481 - -0.6 834,578 - -0.4 834,722 + GFF3105 0.24 -0.1 834,878 - GFF3105 0.51 -0.2 834,935 - GFF3105 0.60 +1.0 835,021 + GFF3105 0.75 +1.3 835,303 + GFF3106 0.20 +1.2 835,534 + GFF3106 0.56 -0.6 835,534 + GFF3106 0.56 -0.1 835,534 + GFF3106 0.56 +0.5 835,534 + GFF3106 0.56 +1.3 835,535 - GFF3106 0.56 +0.7 835,535 - GFF3106 0.56 -0.1 835,535 - GFF3106 0.56 -0.9 835,535 - GFF3106 0.56 +0.1
Or see this region's nucleotide sequence