Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3064 and GFF3065 are separated by 159 nucleotides GFF3065 and GFF3066 are separated by 338 nucleotides
GFF3064 - hypothetical protein, at 794,421 to 795,314
GFF3064
GFF3065 - Bicyclomycin resistance protein, at 795,474 to 796,763
GFF3065
GFF3066 - Phospho-2-dehydro-3-deoxyheptonate aldolase, at 797,102 to 798,538
GFF3066
Position (kb) 795
796
797 Strain fitness (log2 ratio) -2
-1
0
1 at 794.554 kb on + strand, within GFF3064 at 794.602 kb on + strand, within GFF3064 at 794.684 kb on - strand, within GFF3064 at 794.761 kb on + strand, within GFF3064 at 794.762 kb on - strand, within GFF3064 at 795.109 kb on + strand, within GFF3064 at 795.109 kb on + strand, within GFF3064 at 795.110 kb on - strand, within GFF3064 at 795.223 kb on + strand, within GFF3064 at 795.223 kb on + strand, within GFF3064 at 795.385 kb on - strand at 795.475 kb on + strand at 795.476 kb on - strand at 795.991 kb on + strand, within GFF3065 at 795.991 kb on + strand, within GFF3065 at 795.992 kb on - strand, within GFF3065 at 795.992 kb on - strand, within GFF3065 at 796.034 kb on - strand, within GFF3065 at 796.108 kb on + strand, within GFF3065 at 796.432 kb on + strand, within GFF3065 at 796.432 kb on + strand, within GFF3065 at 796.432 kb on + strand, within GFF3065 at 796.432 kb on + strand, within GFF3065 at 796.433 kb on - strand, within GFF3065 at 796.452 kb on + strand, within GFF3065 at 796.452 kb on + strand, within GFF3065 at 796.452 kb on + strand, within GFF3065 at 796.453 kb on - strand, within GFF3065 at 796.453 kb on - strand, within GFF3065 at 796.492 kb on + strand, within GFF3065 at 796.525 kb on + strand, within GFF3065 at 796.526 kb on - strand, within GFF3065 at 796.531 kb on + strand, within GFF3065 at 796.531 kb on + strand, within GFF3065 at 796.532 kb on - strand, within GFF3065 at 796.995 kb on + strand at 796.995 kb on + strand at 796.997 kb on + strand at 796.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 794,554 + GFF3064 0.15 -0.3 794,602 + GFF3064 0.20 +0.1 794,684 - GFF3064 0.29 +1.5 794,761 + GFF3064 0.38 +1.7 794,762 - GFF3064 0.38 -0.6 795,109 + GFF3064 0.77 -1.1 795,109 + GFF3064 0.77 +0.9 795,110 - GFF3064 0.77 +0.2 795,223 + GFF3064 0.90 +0.6 795,223 + GFF3064 0.90 -0.8 795,385 - +0.2 795,475 + -1.1 795,476 - -0.1 795,991 + GFF3065 0.40 -0.0 795,991 + GFF3065 0.40 +0.1 795,992 - GFF3065 0.40 +1.0 795,992 - GFF3065 0.40 +0.7 796,034 - GFF3065 0.43 -0.3 796,108 + GFF3065 0.49 +1.0 796,432 + GFF3065 0.74 -0.5 796,432 + GFF3065 0.74 -1.5 796,432 + GFF3065 0.74 -0.6 796,432 + GFF3065 0.74 -1.9 796,433 - GFF3065 0.74 +0.5 796,452 + GFF3065 0.76 -0.1 796,452 + GFF3065 0.76 +0.2 796,452 + GFF3065 0.76 +0.4 796,453 - GFF3065 0.76 +0.2 796,453 - GFF3065 0.76 -0.7 796,492 + GFF3065 0.79 +0.1 796,525 + GFF3065 0.81 -0.6 796,526 - GFF3065 0.82 -1.1 796,531 + GFF3065 0.82 +0.2 796,531 + GFF3065 0.82 -2.0 796,532 - GFF3065 0.82 +0.8 796,995 + +0.3 796,995 + -1.7 796,997 + +0.5 796,997 + +0.2
Or see this region's nucleotide sequence