Strain Fitness in Xanthobacter sp. DMC5 around GFF3031

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3030 and GFF3031 are separated by 141 nucleotidesGFF3031 and GFF3032 are separated by 667 nucleotides GFF3030 - hypothetical protein, at 753,183 to 754,142 GFF3030 GFF3031 - Methanol dehydrogenase [cytochrome c] subunit 1, at 754,284 to 756,170 GFF3031 GFF3032 - hypothetical protein, at 756,838 to 757,377 GFF3032 Position (kb) 754 755 756 757Strain fitness (log2 ratio) -2 -1 0 1 2at 753.407 kb on - strand, within GFF3030at 753.407 kb on - strand, within GFF3030at 753.496 kb on + strand, within GFF3030at 753.497 kb on - strand, within GFF3030at 753.532 kb on + strand, within GFF3030at 753.533 kb on - strand, within GFF3030at 753.538 kb on + strand, within GFF3030at 753.538 kb on + strand, within GFF3030at 753.556 kb on + strand, within GFF3030at 753.557 kb on - strand, within GFF3030at 753.557 kb on - strand, within GFF3030at 753.688 kb on + strand, within GFF3030at 753.689 kb on - strand, within GFF3030at 753.689 kb on - strand, within GFF3030at 753.689 kb on - strand, within GFF3030at 753.700 kb on + strand, within GFF3030at 753.703 kb on + strand, within GFF3030at 753.703 kb on + strand, within GFF3030at 753.703 kb on + strand, within GFF3030at 753.754 kb on - strand, within GFF3030at 753.754 kb on - strand, within GFF3030at 753.881 kb on + strand, within GFF3030at 754.301 kb on - strandat 754.301 kb on - strandat 754.324 kb on + strandat 754.324 kb on + strandat 754.379 kb on - strandat 754.478 kb on - strand, within GFF3031at 754.478 kb on - strand, within GFF3031at 754.480 kb on + strand, within GFF3031at 754.480 kb on + strand, within GFF3031at 754.481 kb on - strand, within GFF3031at 754.481 kb on - strand, within GFF3031at 754.481 kb on - strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.493 kb on - strand, within GFF3031at 754.513 kb on + strand, within GFF3031at 754.513 kb on + strand, within GFF3031at 754.513 kb on + strand, within GFF3031at 754.514 kb on - strand, within GFF3031at 754.616 kb on - strand, within GFF3031at 754.687 kb on + strand, within GFF3031at 754.688 kb on - strand, within GFF3031at 754.688 kb on - strand, within GFF3031at 754.708 kb on + strand, within GFF3031at 754.709 kb on - strand, within GFF3031at 754.735 kb on + strand, within GFF3031at 754.735 kb on + strand, within GFF3031at 754.735 kb on + strand, within GFF3031at 754.735 kb on + strand, within GFF3031at 754.765 kb on + strand, within GFF3031at 754.765 kb on + strand, within GFF3031at 754.766 kb on - strand, within GFF3031at 754.882 kb on + strand, within GFF3031at 754.883 kb on - strand, within GFF3031at 754.883 kb on - strand, within GFF3031at 754.961 kb on - strand, within GFF3031at 755.060 kb on + strand, within GFF3031at 755.074 kb on + strand, within GFF3031at 755.075 kb on - strand, within GFF3031at 755.170 kb on + strand, within GFF3031at 755.312 kb on - strand, within GFF3031at 755.314 kb on + strand, within GFF3031at 755.314 kb on + strand, within GFF3031at 755.314 kb on + strand, within GFF3031at 755.315 kb on - strand, within GFF3031at 755.344 kb on + strand, within GFF3031at 755.344 kb on + strand, within GFF3031at 755.485 kb on + strand, within GFF3031at 755.485 kb on + strand, within GFF3031at 755.485 kb on + strand, within GFF3031at 755.521 kb on + strand, within GFF3031at 755.522 kb on - strand, within GFF3031at 755.522 kb on - strand, within GFF3031at 755.533 kb on + strand, within GFF3031at 755.534 kb on - strand, within GFF3031at 755.593 kb on + strand, within GFF3031at 755.593 kb on + strand, within GFF3031at 755.594 kb on - strand, within GFF3031at 755.594 kb on - strand, within GFF3031at 755.626 kb on - strand, within GFF3031at 755.685 kb on - strand, within GFF3031at 755.884 kb on + strand, within GFF3031at 755.884 kb on + strand, within GFF3031at 755.884 kb on + strand, within GFF3031at 755.884 kb on + strand, within GFF3031at 755.884 kb on + strand, within GFF3031at 755.884 kb on + strand, within GFF3031at 755.885 kb on - strand, within GFF3031at 755.885 kb on - strand, within GFF3031at 755.885 kb on - strand, within GFF3031at 755.885 kb on - strand, within GFF3031at 756.019 kb on + strandat 756.098 kb on + strandat 756.098 kb on + strandat 756.099 kb on - strandat 756.559 kb on - strandat 756.611 kb on - strandat 757.048 kb on - strand, within GFF3032

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
753,407 - GFF3030 0.23 -0.7
753,407 - GFF3030 0.23 +0.7
753,496 + GFF3030 0.33 -0.7
753,497 - GFF3030 0.33 -0.8
753,532 + GFF3030 0.36 +0.3
753,533 - GFF3030 0.36 -0.7
753,538 + GFF3030 0.37 -0.3
753,538 + GFF3030 0.37 +0.5
753,556 + GFF3030 0.39 -0.1
753,557 - GFF3030 0.39 +0.4
753,557 - GFF3030 0.39 -0.4
753,688 + GFF3030 0.53 -0.1
753,689 - GFF3030 0.53 -0.0
753,689 - GFF3030 0.53 -0.0
753,689 - GFF3030 0.53 +0.1
753,700 + GFF3030 0.54 -1.3
753,703 + GFF3030 0.54 +0.2
753,703 + GFF3030 0.54 -0.2
753,703 + GFF3030 0.54 -0.0
753,754 - GFF3030 0.59 -1.1
753,754 - GFF3030 0.59 +0.1
753,881 + GFF3030 0.73 -0.0
754,301 - -0.3
754,301 - +0.4
754,324 + +0.4
754,324 + -0.5
754,379 - +0.1
754,478 - GFF3031 0.10 -1.3
754,478 - GFF3031 0.10 -0.6
754,480 + GFF3031 0.10 +0.1
754,480 + GFF3031 0.10 +0.4
754,481 - GFF3031 0.10 -0.7
754,481 - GFF3031 0.10 +0.6
754,481 - GFF3031 0.10 -1.0
754,492 + GFF3031 0.11 +1.2
754,492 + GFF3031 0.11 -0.1
754,492 + GFF3031 0.11 +0.2
754,492 + GFF3031 0.11 -0.8
754,492 + GFF3031 0.11 -0.2
754,492 + GFF3031 0.11 -0.2
754,492 + GFF3031 0.11 -0.2
754,492 + GFF3031 0.11 -0.3
754,492 + GFF3031 0.11 +0.5
754,493 - GFF3031 0.11 -0.3
754,513 + GFF3031 0.12 +0.3
754,513 + GFF3031 0.12 -0.6
754,513 + GFF3031 0.12 -1.5
754,514 - GFF3031 0.12 -1.3
754,616 - GFF3031 0.18 -0.8
754,687 + GFF3031 0.21 -0.1
754,688 - GFF3031 0.21 +0.5
754,688 - GFF3031 0.21 +0.1
754,708 + GFF3031 0.22 +0.8
754,709 - GFF3031 0.23 -1.4
754,735 + GFF3031 0.24 -1.1
754,735 + GFF3031 0.24 +1.0
754,735 + GFF3031 0.24 +1.0
754,735 + GFF3031 0.24 -0.1
754,765 + GFF3031 0.25 +0.5
754,765 + GFF3031 0.25 -0.3
754,766 - GFF3031 0.26 +0.1
754,882 + GFF3031 0.32 +0.8
754,883 - GFF3031 0.32 +0.4
754,883 - GFF3031 0.32 +0.4
754,961 - GFF3031 0.36 -0.1
755,060 + GFF3031 0.41 -0.8
755,074 + GFF3031 0.42 +0.2
755,075 - GFF3031 0.42 +0.3
755,170 + GFF3031 0.47 +1.3
755,312 - GFF3031 0.54 -0.4
755,314 + GFF3031 0.55 -0.0
755,314 + GFF3031 0.55 +0.1
755,314 + GFF3031 0.55 +0.2
755,315 - GFF3031 0.55 -0.0
755,344 + GFF3031 0.56 -0.4
755,344 + GFF3031 0.56 -0.0
755,485 + GFF3031 0.64 +1.6
755,485 + GFF3031 0.64 +0.2
755,485 + GFF3031 0.64 +0.6
755,521 + GFF3031 0.66 -0.3
755,522 - GFF3031 0.66 +0.1
755,522 - GFF3031 0.66 +0.1
755,533 + GFF3031 0.66 -1.8
755,534 - GFF3031 0.66 -0.0
755,593 + GFF3031 0.69 -0.5
755,593 + GFF3031 0.69 -0.7
755,594 - GFF3031 0.69 +1.0
755,594 - GFF3031 0.69 -0.0
755,626 - GFF3031 0.71 +0.1
755,685 - GFF3031 0.74 +0.7
755,884 + GFF3031 0.85 -0.2
755,884 + GFF3031 0.85 +0.5
755,884 + GFF3031 0.85 -0.3
755,884 + GFF3031 0.85 -0.2
755,884 + GFF3031 0.85 +2.2
755,884 + GFF3031 0.85 -0.4
755,885 - GFF3031 0.85 -0.1
755,885 - GFF3031 0.85 +0.3
755,885 - GFF3031 0.85 +1.1
755,885 - GFF3031 0.85 -0.4
756,019 + +0.6
756,098 + +1.0
756,098 + -1.0
756,099 - +0.6
756,559 - +0.0
756,611 - -0.0
757,048 - GFF3032 0.39 +0.6

Or see this region's nucleotide sequence