Strain Fitness in Xanthobacter sp. DMC5 around GFF2990

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2989 and GFF2990 are separated by 5 nucleotidesGFF2990 and GFF2991 are separated by 309 nucleotides GFF2989 - Vitamin B12 import ATP-binding protein BtuD, at 714,109 to 716,100 GFF2989 GFF2990 - High-affinity branched-chain amino acid transport system permease protein LivH, at 716,106 to 717,005 GFF2990 GFF2991 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 717,315 to 718,535 GFF2991 Position (kb) 716 717 718Strain fitness (log2 ratio) -2 -1 0 1at 715.211 kb on + strand, within GFF2989at 715.362 kb on + strand, within GFF2989at 715.363 kb on - strand, within GFF2989at 715.364 kb on + strand, within GFF2989at 715.364 kb on + strand, within GFF2989at 715.364 kb on + strand, within GFF2989at 715.365 kb on - strand, within GFF2989at 715.365 kb on - strand, within GFF2989at 715.365 kb on - strand, within GFF2989at 715.365 kb on - strand, within GFF2989at 715.445 kb on + strand, within GFF2989at 715.445 kb on + strand, within GFF2989at 715.445 kb on + strand, within GFF2989at 715.446 kb on - strand, within GFF2989at 715.527 kb on + strand, within GFF2989at 715.528 kb on - strand, within GFF2989at 715.574 kb on + strand, within GFF2989at 715.575 kb on - strand, within GFF2989at 715.577 kb on + strand, within GFF2989at 715.577 kb on + strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.580 kb on + strand, within GFF2989at 715.581 kb on - strand, within GFF2989at 715.763 kb on + strand, within GFF2989at 715.764 kb on - strand, within GFF2989at 715.889 kb on + strand, within GFF2989at 715.890 kb on - strand, within GFF2989at 715.890 kb on - strand, within GFF2989at 715.938 kb on + strandat 715.941 kb on - strandat 716.009 kb on + strandat 716.009 kb on + strandat 716.010 kb on - strandat 716.013 kb on - strandat 716.013 kb on - strandat 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.213 kb on - strand, within GFF2990at 716.213 kb on - strand, within GFF2990at 716.213 kb on - strand, within GFF2990at 716.215 kb on + strand, within GFF2990at 716.216 kb on - strand, within GFF2990at 716.314 kb on - strand, within GFF2990at 716.803 kb on + strand, within GFF2990at 716.803 kb on + strand, within GFF2990at 716.803 kb on + strand, within GFF2990at 716.804 kb on - strand, within GFF2990at 716.953 kb on + strandat 716.953 kb on + strandat 716.954 kb on - strandat 716.954 kb on - strandat 716.954 kb on - strandat 717.001 kb on + strandat 717.115 kb on + strandat 717.132 kb on + strandat 717.133 kb on - strandat 717.212 kb on + strandat 717.292 kb on + strandat 717.293 kb on - strandat 717.293 kb on - strandat 717.460 kb on + strand, within GFF2991at 717.460 kb on + strand, within GFF2991at 717.577 kb on + strand, within GFF2991at 717.622 kb on + strand, within GFF2991at 717.622 kb on + strand, within GFF2991at 717.623 kb on - strand, within GFF2991at 717.634 kb on + strand, within GFF2991at 717.634 kb on + strand, within GFF2991at 717.634 kb on + strand, within GFF2991at 717.635 kb on - strand, within GFF2991at 717.832 kb on + strand, within GFF2991at 717.833 kb on - strand, within GFF2991at 717.983 kb on - strand, within GFF2991

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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715,211 + GFF2989 0.55 -0.0
715,362 + GFF2989 0.63 +1.0
715,363 - GFF2989 0.63 -0.9
715,364 + GFF2989 0.63 -0.8
715,364 + GFF2989 0.63 -2.2
715,364 + GFF2989 0.63 +0.6
715,365 - GFF2989 0.63 -0.0
715,365 - GFF2989 0.63 +0.1
715,365 - GFF2989 0.63 -0.9
715,365 - GFF2989 0.63 +1.0
715,445 + GFF2989 0.67 +0.3
715,445 + GFF2989 0.67 -1.2
715,445 + GFF2989 0.67 -1.2
715,446 - GFF2989 0.67 -1.0
715,527 + GFF2989 0.71 +0.5
715,528 - GFF2989 0.71 -0.0
715,574 + GFF2989 0.74 -1.0
715,575 - GFF2989 0.74 -0.2
715,577 + GFF2989 0.74 +0.1
715,577 + GFF2989 0.74 +1.1
715,578 - GFF2989 0.74 +0.7
715,578 - GFF2989 0.74 +1.2
715,578 - GFF2989 0.74 +0.0
715,578 - GFF2989 0.74 -1.0
715,578 - GFF2989 0.74 +0.8
715,580 + GFF2989 0.74 +0.4
715,581 - GFF2989 0.74 +0.9
715,763 + GFF2989 0.83 +0.4
715,764 - GFF2989 0.83 +0.5
715,889 + GFF2989 0.89 +0.3
715,890 - GFF2989 0.89 -0.8
715,890 - GFF2989 0.89 +0.2
715,938 + +0.1
715,941 - +0.0
716,009 + -0.6
716,009 + +0.4
716,010 - +0.2
716,013 - +0.0
716,013 - -0.5
716,212 + GFF2990 0.12 +0.1
716,212 + GFF2990 0.12 -0.0
716,212 + GFF2990 0.12 -1.4
716,212 + GFF2990 0.12 -0.1
716,212 + GFF2990 0.12 +0.4
716,212 + GFF2990 0.12 +0.1
716,213 - GFF2990 0.12 -2.4
716,213 - GFF2990 0.12 +0.3
716,213 - GFF2990 0.12 -0.0
716,215 + GFF2990 0.12 +0.0
716,216 - GFF2990 0.12 +1.6
716,314 - GFF2990 0.23 -1.3
716,803 + GFF2990 0.77 +0.9
716,803 + GFF2990 0.77 +0.7
716,803 + GFF2990 0.77 +0.4
716,804 - GFF2990 0.78 +0.1
716,953 + +0.1
716,953 + +0.6
716,954 - -0.1
716,954 - +0.4
716,954 - +0.2
717,001 + -0.5
717,115 + +0.4
717,132 + +0.0
717,133 - -0.0
717,212 + -0.5
717,292 + +1.1
717,293 - +0.8
717,293 - -0.2
717,460 + GFF2991 0.12 +0.3
717,460 + GFF2991 0.12 -0.8
717,577 + GFF2991 0.21 +0.1
717,622 + GFF2991 0.25 -0.5
717,622 + GFF2991 0.25 -0.1
717,623 - GFF2991 0.25 +1.1
717,634 + GFF2991 0.26 +0.4
717,634 + GFF2991 0.26 -0.0
717,634 + GFF2991 0.26 -0.9
717,635 - GFF2991 0.26 +0.2
717,832 + GFF2991 0.42 +0.4
717,833 - GFF2991 0.42 +1.0
717,983 - GFF2991 0.55 -0.3

Or see this region's nucleotide sequence