Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2978 and GFF2979 are separated by 41 nucleotides GFF2979 and GFF2980 are separated by 7 nucleotides GFF2980 and GFF2981 are separated by 124 nucleotides GFF2981 and GFF2982 overlap by 4 nucleotides
GFF2978 - hypothetical protein, at 702,421 to 703,332
GFF2978
GFF2979 - Protein YobA, at 703,374 to 703,739
GFF2979
GFF2980 - hypothetical protein, at 703,747 to 704,649
GFF2980
GFF2981 - KDP operon transcriptional regulatory protein KdpE, at 704,774 to 705,463
GFF2981
GFF2982 - Sensor protein KdpD, at 705,460 to 708,177
GFF2982
Position (kb) 703
704
705 Strain fitness (log2 ratio) -2
-1
0
1 at 702.841 kb on + strand, within GFF2978 at 702.842 kb on - strand, within GFF2978 at 702.842 kb on - strand, within GFF2978 at 702.842 kb on - strand, within GFF2978 at 702.866 kb on - strand, within GFF2978 at 702.866 kb on - strand, within GFF2978 at 703.025 kb on - strand, within GFF2978 at 703.025 kb on - strand, within GFF2978 at 703.025 kb on - strand, within GFF2978 at 703.036 kb on + strand, within GFF2978 at 703.663 kb on - strand, within GFF2979 at 703.737 kb on + strand at 703.737 kb on + strand at 703.737 kb on + strand at 703.738 kb on - strand at 703.738 kb on - strand at 703.738 kb on - strand at 703.738 kb on - strand at 703.776 kb on + strand at 704.399 kb on + strand, within GFF2980 at 704.399 kb on + strand, within GFF2980 at 704.400 kb on - strand, within GFF2980 at 704.437 kb on + strand, within GFF2980 at 704.437 kb on + strand, within GFF2980 at 704.437 kb on + strand, within GFF2980 at 704.438 kb on - strand, within GFF2980 at 704.438 kb on - strand, within GFF2980 at 704.647 kb on + strand at 704.648 kb on - strand at 704.823 kb on + strand at 704.886 kb on + strand, within GFF2981 at 704.928 kb on + strand, within GFF2981 at 704.929 kb on - strand, within GFF2981 at 704.929 kb on - strand, within GFF2981 at 704.972 kb on + strand, within GFF2981 at 704.972 kb on + strand, within GFF2981 at 704.982 kb on + strand, within GFF2981 at 704.982 kb on + strand, within GFF2981 at 704.982 kb on + strand, within GFF2981 at 704.983 kb on - strand, within GFF2981 at 704.983 kb on - strand, within GFF2981 at 705.159 kb on + strand, within GFF2981 at 705.159 kb on + strand, within GFF2981 at 705.159 kb on + strand, within GFF2981 at 705.160 kb on - strand, within GFF2981 at 705.160 kb on - strand, within GFF2981 at 705.160 kb on - strand, within GFF2981 at 705.160 kb on - strand, within GFF2981 at 705.160 kb on - strand, within GFF2981
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 702,841 + GFF2978 0.46 -0.3 702,842 - GFF2978 0.46 +0.4 702,842 - GFF2978 0.46 +0.1 702,842 - GFF2978 0.46 +0.6 702,866 - GFF2978 0.49 -0.2 702,866 - GFF2978 0.49 +0.6 703,025 - GFF2978 0.66 +0.4 703,025 - GFF2978 0.66 -0.5 703,025 - GFF2978 0.66 -1.7 703,036 + GFF2978 0.67 +0.5 703,663 - GFF2979 0.79 +1.1 703,737 + +0.3 703,737 + -1.3 703,737 + -0.6 703,738 - -0.6 703,738 - -0.1 703,738 - -1.6 703,738 - -0.6 703,776 + -0.3 704,399 + GFF2980 0.72 +0.8 704,399 + GFF2980 0.72 +0.3 704,400 - GFF2980 0.72 -0.1 704,437 + GFF2980 0.76 +0.3 704,437 + GFF2980 0.76 +0.6 704,437 + GFF2980 0.76 +0.0 704,438 - GFF2980 0.77 +1.0 704,438 - GFF2980 0.77 -0.5 704,647 + -0.0 704,648 - +1.1 704,823 + -1.1 704,886 + GFF2981 0.16 -2.3 704,928 + GFF2981 0.22 -2.4 704,929 - GFF2981 0.22 -1.9 704,929 - GFF2981 0.22 -0.4 704,972 + GFF2981 0.29 +0.2 704,972 + GFF2981 0.29 +1.0 704,982 + GFF2981 0.30 -0.2 704,982 + GFF2981 0.30 +0.2 704,982 + GFF2981 0.30 -0.3 704,983 - GFF2981 0.30 -2.6 704,983 - GFF2981 0.30 -0.6 705,159 + GFF2981 0.56 -1.0 705,159 + GFF2981 0.56 -1.0 705,159 + GFF2981 0.56 -0.6 705,160 - GFF2981 0.56 +1.6 705,160 - GFF2981 0.56 -0.6 705,160 - GFF2981 0.56 -0.1 705,160 - GFF2981 0.56 -0.4 705,160 - GFF2981 0.56 -1.5
Or see this region's nucleotide sequence