Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2963 and GFF2964 are separated by 163 nucleotides GFF2964 and GFF2965 are separated by 17 nucleotides
GFF2963 - 2-amino-5-chloromuconic acid deaminase, at 688,201 to 689,379
GFF2963
GFF2964 - HTH-type transcriptional regulator HdfR, at 689,543 to 690,436
GFF2964
GFF2965 - Phenylacetaldoxime dehydratase, at 690,454 to 691,503
GFF2965
Position (kb) 689
690
691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 688.697 kb on + strand, within GFF2963 at 688.697 kb on + strand, within GFF2963 at 688.955 kb on + strand, within GFF2963 at 688.956 kb on - strand, within GFF2963 at 688.956 kb on - strand, within GFF2963 at 688.956 kb on - strand, within GFF2963 at 689.096 kb on + strand, within GFF2963 at 689.139 kb on + strand, within GFF2963 at 689.139 kb on + strand, within GFF2963 at 689.139 kb on + strand, within GFF2963 at 689.139 kb on + strand, within GFF2963 at 689.140 kb on - strand, within GFF2963 at 689.433 kb on - strand at 689.510 kb on + strand at 689.511 kb on - strand at 689.859 kb on - strand, within GFF2964 at 689.859 kb on - strand, within GFF2964 at 690.053 kb on + strand, within GFF2964 at 690.116 kb on + strand, within GFF2964 at 690.117 kb on - strand, within GFF2964 at 690.117 kb on - strand, within GFF2964 at 690.117 kb on - strand, within GFF2964 at 690.250 kb on - strand, within GFF2964 at 690.250 kb on - strand, within GFF2964 at 690.250 kb on - strand, within GFF2964 at 690.250 kb on - strand, within GFF2964 at 690.286 kb on + strand, within GFF2964 at 690.287 kb on - strand, within GFF2964 at 690.287 kb on - strand, within GFF2964 at 690.329 kb on + strand, within GFF2964 at 690.329 kb on + strand, within GFF2964 at 690.329 kb on + strand, within GFF2964 at 690.330 kb on - strand, within GFF2964 at 690.330 kb on - strand, within GFF2964 at 690.330 kb on - strand, within GFF2964 at 690.420 kb on - strand at 690.455 kb on + strand at 690.513 kb on - strand at 690.587 kb on + strand, within GFF2965 at 690.588 kb on - strand, within GFF2965 at 690.588 kb on - strand, within GFF2965 at 690.680 kb on + strand, within GFF2965 at 690.681 kb on - strand, within GFF2965 at 690.824 kb on + strand, within GFF2965 at 690.824 kb on + strand, within GFF2965 at 690.824 kb on + strand, within GFF2965 at 690.824 kb on + strand, within GFF2965 at 690.825 kb on - strand, within GFF2965 at 691.010 kb on + strand, within GFF2965 at 691.013 kb on + strand, within GFF2965 at 691.035 kb on - strand, within GFF2965 at 691.086 kb on - strand, within GFF2965 at 691.140 kb on + strand, within GFF2965 at 691.249 kb on - strand, within GFF2965 at 691.250 kb on + strand, within GFF2965 at 691.250 kb on + strand, within GFF2965 at 691.250 kb on + strand, within GFF2965
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 688,697 + GFF2963 0.42 -2.2 688,697 + GFF2963 0.42 -0.3 688,955 + GFF2963 0.64 +1.0 688,956 - GFF2963 0.64 -0.8 688,956 - GFF2963 0.64 -0.5 688,956 - GFF2963 0.64 +0.1 689,096 + GFF2963 0.76 +0.8 689,139 + GFF2963 0.80 -2.2 689,139 + GFF2963 0.80 -0.1 689,139 + GFF2963 0.80 +0.5 689,139 + GFF2963 0.80 +0.4 689,140 - GFF2963 0.80 -0.6 689,433 - +1.6 689,510 + -0.9 689,511 - -1.4 689,859 - GFF2964 0.35 +0.0 689,859 - GFF2964 0.35 -0.1 690,053 + GFF2964 0.57 -0.5 690,116 + GFF2964 0.64 +1.5 690,117 - GFF2964 0.64 +0.1 690,117 - GFF2964 0.64 +2.0 690,117 - GFF2964 0.64 -0.6 690,250 - GFF2964 0.79 -0.4 690,250 - GFF2964 0.79 +0.2 690,250 - GFF2964 0.79 -1.3 690,250 - GFF2964 0.79 -0.2 690,286 + GFF2964 0.83 -1.6 690,287 - GFF2964 0.83 -0.1 690,287 - GFF2964 0.83 +0.7 690,329 + GFF2964 0.88 -0.7 690,329 + GFF2964 0.88 +0.7 690,329 + GFF2964 0.88 +1.6 690,330 - GFF2964 0.88 +1.6 690,330 - GFF2964 0.88 +1.6 690,330 - GFF2964 0.88 -0.3 690,420 - +1.3 690,455 + +0.9 690,513 - -0.5 690,587 + GFF2965 0.13 +0.8 690,588 - GFF2965 0.13 -0.6 690,588 - GFF2965 0.13 -0.8 690,680 + GFF2965 0.22 +0.3 690,681 - GFF2965 0.22 +1.1 690,824 + GFF2965 0.35 -0.1 690,824 + GFF2965 0.35 +0.7 690,824 + GFF2965 0.35 -0.1 690,824 + GFF2965 0.35 -0.1 690,825 - GFF2965 0.35 -1.8 691,010 + GFF2965 0.53 +0.5 691,013 + GFF2965 0.53 +0.8 691,035 - GFF2965 0.55 -1.3 691,086 - GFF2965 0.60 +1.2 691,140 + GFF2965 0.65 -0.0 691,249 - GFF2965 0.76 +0.4 691,250 + GFF2965 0.76 -0.6 691,250 + GFF2965 0.76 -0.3 691,250 + GFF2965 0.76 -0.3
Or see this region's nucleotide sequence