Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2938 and GFF2939 overlap by 1 nucleotides GFF2939 and GFF2940 are separated by 119 nucleotides GFF2940 and GFF2941 overlap by 1 nucleotides
GFF2938 - putative HTH-type transcriptional regulator YxaF, at 659,550 to 660,113
GFF2938
GFF2939 - hypothetical protein, at 660,113 to 660,577
GFF2939
GFF2940 - Multidrug resistance protein MdtC, at 660,697 to 663,828
GFF2940
GFF2941 - hypothetical protein, at 663,828 to 665,177
GFF2941
Position (kb) 660
661
662
663
664 Strain fitness (log2 ratio) -2
-1
0
1 at 659.833 kb on + strand, within GFF2938 at 659.834 kb on - strand, within GFF2938 at 659.984 kb on - strand, within GFF2938 at 660.044 kb on - strand, within GFF2938 at 660.271 kb on - strand, within GFF2939 at 660.309 kb on + strand, within GFF2939 at 660.309 kb on + strand, within GFF2939 at 660.369 kb on + strand, within GFF2939 at 660.370 kb on - strand, within GFF2939 at 660.370 kb on - strand, within GFF2939 at 660.469 kb on - strand, within GFF2939 at 660.698 kb on + strand at 660.699 kb on - strand at 660.699 kb on - strand at 661.674 kb on + strand, within GFF2940 at 661.674 kb on + strand, within GFF2940 at 661.675 kb on - strand, within GFF2940 at 661.675 kb on - strand, within GFF2940 at 662.067 kb on - strand, within GFF2940 at 662.067 kb on - strand, within GFF2940 at 662.213 kb on - strand, within GFF2940 at 662.309 kb on + strand, within GFF2940 at 662.309 kb on + strand, within GFF2940 at 662.310 kb on - strand, within GFF2940 at 662.310 kb on - strand, within GFF2940 at 662.366 kb on + strand, within GFF2940 at 662.367 kb on - strand, within GFF2940 at 662.367 kb on - strand, within GFF2940 at 662.453 kb on + strand, within GFF2940 at 662.453 kb on + strand, within GFF2940 at 662.838 kb on - strand, within GFF2940 at 662.937 kb on - strand, within GFF2940 at 663.135 kb on + strand, within GFF2940 at 663.136 kb on - strand, within GFF2940 at 663.136 kb on - strand, within GFF2940 at 663.401 kb on + strand, within GFF2940 at 663.402 kb on - strand, within GFF2940 at 663.402 kb on - strand, within GFF2940 at 663.402 kb on - strand, within GFF2940 at 663.912 kb on + strand at 664.021 kb on + strand, within GFF2941 at 664.021 kb on + strand, within GFF2941 at 664.021 kb on + strand, within GFF2941 at 664.021 kb on + strand, within GFF2941 at 664.022 kb on - strand, within GFF2941 at 664.022 kb on - strand, within GFF2941 at 664.022 kb on - strand, within GFF2941 at 664.022 kb on - strand, within GFF2941 at 664.106 kb on - strand, within GFF2941 at 664.106 kb on - strand, within GFF2941 at 664.801 kb on + strand, within GFF2941 at 664.802 kb on - strand, within GFF2941
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 659,833 + GFF2938 0.50 -1.1 659,834 - GFF2938 0.50 +0.5 659,984 - GFF2938 0.77 -0.8 660,044 - GFF2938 0.88 -0.5 660,271 - GFF2939 0.34 +0.2 660,309 + GFF2939 0.42 +0.3 660,309 + GFF2939 0.42 -0.8 660,369 + GFF2939 0.55 +0.0 660,370 - GFF2939 0.55 +0.0 660,370 - GFF2939 0.55 -1.0 660,469 - GFF2939 0.77 -0.2 660,698 + +0.1 660,699 - -2.6 660,699 - +0.6 661,674 + GFF2940 0.31 -0.3 661,674 + GFF2940 0.31 +0.4 661,675 - GFF2940 0.31 -1.1 661,675 - GFF2940 0.31 +0.6 662,067 - GFF2940 0.44 +0.3 662,067 - GFF2940 0.44 -0.0 662,213 - GFF2940 0.48 +0.6 662,309 + GFF2940 0.51 +0.4 662,309 + GFF2940 0.51 +0.6 662,310 - GFF2940 0.52 -0.2 662,310 - GFF2940 0.52 +0.1 662,366 + GFF2940 0.53 +0.3 662,367 - GFF2940 0.53 +0.1 662,367 - GFF2940 0.53 -1.4 662,453 + GFF2940 0.56 +0.0 662,453 + GFF2940 0.56 -0.6 662,838 - GFF2940 0.68 -0.1 662,937 - GFF2940 0.72 -0.2 663,135 + GFF2940 0.78 +0.7 663,136 - GFF2940 0.78 -0.3 663,136 - GFF2940 0.78 -0.5 663,401 + GFF2940 0.86 -0.1 663,402 - GFF2940 0.86 -1.1 663,402 - GFF2940 0.86 +0.0 663,402 - GFF2940 0.86 -0.6 663,912 + -1.1 664,021 + GFF2941 0.14 +0.2 664,021 + GFF2941 0.14 -0.1 664,021 + GFF2941 0.14 -1.1 664,021 + GFF2941 0.14 -1.6 664,022 - GFF2941 0.14 -0.5 664,022 - GFF2941 0.14 -0.3 664,022 - GFF2941 0.14 -1.0 664,022 - GFF2941 0.14 -0.1 664,106 - GFF2941 0.21 +1.6 664,106 - GFF2941 0.21 -0.7 664,801 + GFF2941 0.72 -0.3 664,802 - GFF2941 0.72 -0.2
Or see this region's nucleotide sequence