Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2905 and GFF2906 are separated by 414 nucleotides GFF2906 and GFF2907 are separated by 104 nucleotides
GFF2905 - hypothetical protein, at 621,817 to 622,788
GFF2905
GFF2906 - Inner membrane transport protein YdhP, at 623,203 to 624,375
GFF2906
GFF2907 - HTH-type transcriptional regulator DmlR, at 624,480 to 625,400
GFF2907
Position (kb) 623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 622.311 kb on - strand, within GFF2905 at 622.311 kb on - strand, within GFF2905 at 622.323 kb on + strand, within GFF2905 at 622.323 kb on + strand, within GFF2905 at 622.324 kb on - strand, within GFF2905 at 622.491 kb on + strand, within GFF2905 at 622.493 kb on + strand, within GFF2905 at 622.494 kb on - strand, within GFF2905 at 622.652 kb on + strand, within GFF2905 at 622.653 kb on - strand, within GFF2905 at 623.049 kb on - strand at 623.060 kb on - strand at 623.312 kb on + strand at 623.373 kb on + strand, within GFF2906 at 623.385 kb on + strand, within GFF2906 at 623.386 kb on - strand, within GFF2906 at 623.639 kb on + strand, within GFF2906 at 623.640 kb on - strand, within GFF2906 at 623.706 kb on + strand, within GFF2906 at 623.706 kb on + strand, within GFF2906 at 623.706 kb on + strand, within GFF2906 at 623.707 kb on - strand, within GFF2906 at 623.708 kb on + strand, within GFF2906 at 623.708 kb on + strand, within GFF2906 at 623.708 kb on + strand, within GFF2906 at 623.708 kb on + strand, within GFF2906 at 623.709 kb on - strand, within GFF2906 at 623.709 kb on - strand, within GFF2906 at 623.709 kb on - strand, within GFF2906 at 623.709 kb on - strand, within GFF2906 at 623.709 kb on - strand, within GFF2906 at 623.709 kb on - strand, within GFF2906 at 623.709 kb on - strand, within GFF2906 at 623.887 kb on + strand, within GFF2906 at 624.099 kb on - strand, within GFF2906 at 624.230 kb on + strand, within GFF2906 at 624.230 kb on + strand, within GFF2906 at 624.231 kb on - strand, within GFF2906 at 624.231 kb on - strand, within GFF2906 at 624.231 kb on - strand, within GFF2906 at 624.231 kb on - strand, within GFF2906 at 624.313 kb on + strand at 624.413 kb on + strand at 624.414 kb on - strand at 624.414 kb on - strand at 624.414 kb on - strand at 624.414 kb on - strand at 624.438 kb on + strand at 624.458 kb on + strand at 624.458 kb on + strand at 624.458 kb on + strand at 624.458 kb on + strand at 624.681 kb on + strand, within GFF2907 at 624.681 kb on + strand, within GFF2907
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 622,311 - GFF2905 0.51 -1.3 622,311 - GFF2905 0.51 -0.8 622,323 + GFF2905 0.52 -1.4 622,323 + GFF2905 0.52 -1.3 622,324 - GFF2905 0.52 +0.2 622,491 + GFF2905 0.69 -0.5 622,493 + GFF2905 0.70 +0.2 622,494 - GFF2905 0.70 -0.3 622,652 + GFF2905 0.86 -0.1 622,653 - GFF2905 0.86 +0.3 623,049 - +0.2 623,060 - -0.4 623,312 + -0.1 623,373 + GFF2906 0.14 -0.6 623,385 + GFF2906 0.16 +0.0 623,386 - GFF2906 0.16 +0.2 623,639 + GFF2906 0.37 +0.5 623,640 - GFF2906 0.37 +0.3 623,706 + GFF2906 0.43 -0.1 623,706 + GFF2906 0.43 -0.8 623,706 + GFF2906 0.43 -0.4 623,707 - GFF2906 0.43 -0.5 623,708 + GFF2906 0.43 +0.5 623,708 + GFF2906 0.43 +0.5 623,708 + GFF2906 0.43 +0.3 623,708 + GFF2906 0.43 -0.4 623,709 - GFF2906 0.43 -0.3 623,709 - GFF2906 0.43 -0.3 623,709 - GFF2906 0.43 -0.8 623,709 - GFF2906 0.43 -0.7 623,709 - GFF2906 0.43 -0.3 623,709 - GFF2906 0.43 -0.5 623,709 - GFF2906 0.43 +1.7 623,887 + GFF2906 0.58 +0.9 624,099 - GFF2906 0.76 -0.8 624,230 + GFF2906 0.88 -0.1 624,230 + GFF2906 0.88 +0.1 624,231 - GFF2906 0.88 -0.8 624,231 - GFF2906 0.88 +0.0 624,231 - GFF2906 0.88 -1.0 624,231 - GFF2906 0.88 +0.5 624,313 + -0.4 624,413 + -0.5 624,414 - -1.0 624,414 - +0.2 624,414 - -0.4 624,414 - -2.0 624,438 + -0.5 624,458 + -0.2 624,458 + -3.0 624,458 + -0.4 624,458 + -0.6 624,681 + GFF2907 0.22 -0.1 624,681 + GFF2907 0.22 +0.5
Or see this region's nucleotide sequence