Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2858 and GFF2859 are separated by 54 nucleotides GFF2859 and GFF2860 are separated by 32 nucleotides GFF2860 and GFF2861 overlap by 4 nucleotides
GFF2858 - 4-hydroxybenzoate transporter PcaK, at 572,719 to 574,053
GFF2858
GFF2859 - Benzoate 1,2-dioxygenase electron transfer component, at 574,108 to 575,130
GFF2859
GFF2860 - 2-halobenzoate 1,2-dioxygenase small subunit, at 575,163 to 575,651
GFF2860
GFF2861 - 2-halobenzoate 1,2-dioxygenase large subunit, at 575,648 to 577,006
GFF2861
Position (kb) 574
575
576 Strain fitness (log2 ratio) -2
-1
0
1 at 573.220 kb on + strand, within GFF2858 at 573.221 kb on - strand, within GFF2858 at 573.221 kb on - strand, within GFF2858 at 573.221 kb on - strand, within GFF2858 at 573.248 kb on + strand, within GFF2858 at 573.556 kb on + strand, within GFF2858 at 573.556 kb on + strand, within GFF2858 at 573.556 kb on + strand, within GFF2858 at 573.557 kb on - strand, within GFF2858 at 573.644 kb on + strand, within GFF2858 at 573.644 kb on + strand, within GFF2858 at 573.644 kb on + strand, within GFF2858 at 573.645 kb on - strand, within GFF2858 at 573.645 kb on - strand, within GFF2858 at 573.645 kb on - strand, within GFF2858 at 573.646 kb on + strand, within GFF2858 at 573.926 kb on - strand at 573.951 kb on - strand at 573.951 kb on - strand at 574.089 kb on + strand at 574.110 kb on - strand at 574.151 kb on + strand at 574.232 kb on + strand, within GFF2859 at 574.232 kb on + strand, within GFF2859 at 574.356 kb on + strand, within GFF2859 at 574.357 kb on - strand, within GFF2859 at 574.359 kb on - strand, within GFF2859 at 574.530 kb on - strand, within GFF2859 at 574.530 kb on - strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.668 kb on - strand, within GFF2859 at 574.668 kb on - strand, within GFF2859 at 574.701 kb on + strand, within GFF2859 at 574.709 kb on + strand, within GFF2859 at 574.709 kb on + strand, within GFF2859 at 574.710 kb on - strand, within GFF2859 at 574.710 kb on - strand, within GFF2859 at 574.710 kb on - strand, within GFF2859 at 574.938 kb on + strand, within GFF2859 at 574.939 kb on - strand, within GFF2859 at 574.939 kb on - strand, within GFF2859 at 574.941 kb on - strand, within GFF2859 at 574.958 kb on + strand, within GFF2859 at 574.958 kb on + strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 575.118 kb on + strand at 575.118 kb on + strand at 575.118 kb on + strand at 575.118 kb on + strand at 575.118 kb on + strand at 575.119 kb on - strand at 575.119 kb on - strand at 575.173 kb on + strand at 575.174 kb on - strand at 575.299 kb on + strand, within GFF2860 at 575.299 kb on + strand, within GFF2860 at 575.300 kb on - strand, within GFF2860 at 575.326 kb on + strand, within GFF2860 at 575.470 kb on + strand, within GFF2860 at 575.470 kb on + strand, within GFF2860 at 575.471 kb on - strand, within GFF2860 at 575.471 kb on - strand, within GFF2860 at 575.471 kb on - strand, within GFF2860 at 575.473 kb on + strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.542 kb on + strand, within GFF2860 at 575.542 kb on + strand, within GFF2860 at 575.542 kb on + strand, within GFF2860 at 575.543 kb on - strand, within GFF2860 at 575.560 kb on + strand, within GFF2860 at 575.560 kb on + strand, within GFF2860 at 575.561 kb on - strand, within GFF2860 at 575.615 kb on - strand at 575.706 kb on + strand at 575.706 kb on + strand at 575.706 kb on + strand at 575.707 kb on - strand at 575.707 kb on - strand at 575.859 kb on + strand, within GFF2861 at 575.860 kb on - strand, within GFF2861 at 575.860 kb on - strand, within GFF2861 at 575.860 kb on - strand, within GFF2861 at 575.934 kb on + strand, within GFF2861 at 575.935 kb on - strand, within GFF2861 at 575.990 kb on + strand, within GFF2861 at 576.004 kb on - strand, within GFF2861 at 576.078 kb on + strand, within GFF2861 at 576.078 kb on + strand, within GFF2861 at 576.078 kb on + strand, within GFF2861
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 573,220 + GFF2858 0.38 -0.9 573,221 - GFF2858 0.38 +0.6 573,221 - GFF2858 0.38 -0.5 573,221 - GFF2858 0.38 -0.4 573,248 + GFF2858 0.40 -0.1 573,556 + GFF2858 0.63 -0.9 573,556 + GFF2858 0.63 +0.0 573,556 + GFF2858 0.63 +0.2 573,557 - GFF2858 0.63 +1.0 573,644 + GFF2858 0.69 -0.1 573,644 + GFF2858 0.69 -1.0 573,644 + GFF2858 0.69 +0.5 573,645 - GFF2858 0.69 +0.2 573,645 - GFF2858 0.69 +0.0 573,645 - GFF2858 0.69 -1.6 573,646 + GFF2858 0.69 +0.1 573,926 - -0.4 573,951 - -2.4 573,951 - -0.3 574,089 + +1.2 574,110 - +0.6 574,151 + -0.3 574,232 + GFF2859 0.12 +0.0 574,232 + GFF2859 0.12 +0.0 574,356 + GFF2859 0.24 +0.3 574,357 - GFF2859 0.24 +0.0 574,359 - GFF2859 0.25 -0.5 574,530 - GFF2859 0.41 +1.3 574,530 - GFF2859 0.41 +0.0 574,667 + GFF2859 0.55 -2.1 574,667 + GFF2859 0.55 +1.0 574,667 + GFF2859 0.55 -0.1 574,667 + GFF2859 0.55 -0.6 574,668 - GFF2859 0.55 +0.4 574,668 - GFF2859 0.55 +0.4 574,701 + GFF2859 0.58 -0.3 574,709 + GFF2859 0.59 -0.3 574,709 + GFF2859 0.59 -0.2 574,710 - GFF2859 0.59 -0.0 574,710 - GFF2859 0.59 -1.0 574,710 - GFF2859 0.59 -0.4 574,938 + GFF2859 0.81 -0.3 574,939 - GFF2859 0.81 +0.2 574,939 - GFF2859 0.81 +0.4 574,941 - GFF2859 0.81 +0.0 574,958 + GFF2859 0.83 -0.6 574,958 + GFF2859 0.83 -0.7 574,959 - GFF2859 0.83 -0.0 574,959 - GFF2859 0.83 -1.0 574,959 - GFF2859 0.83 -0.6 574,959 - GFF2859 0.83 +0.4 574,959 - GFF2859 0.83 -1.7 574,959 - GFF2859 0.83 +0.8 574,959 - GFF2859 0.83 -0.8 574,959 - GFF2859 0.83 -0.5 575,118 + -0.2 575,118 + +0.8 575,118 + +0.6 575,118 + -0.1 575,118 + -0.4 575,119 - -1.7 575,119 - -0.4 575,173 + +0.5 575,174 - -1.3 575,299 + GFF2860 0.28 -0.9 575,299 + GFF2860 0.28 +0.6 575,300 - GFF2860 0.28 +0.3 575,326 + GFF2860 0.33 -0.5 575,470 + GFF2860 0.63 +0.0 575,470 + GFF2860 0.63 +0.3 575,471 - GFF2860 0.63 +0.4 575,471 - GFF2860 0.63 -0.5 575,471 - GFF2860 0.63 -1.2 575,473 + GFF2860 0.63 -0.5 575,474 - GFF2860 0.64 +0.6 575,474 - GFF2860 0.64 -0.1 575,474 - GFF2860 0.64 -0.8 575,474 - GFF2860 0.64 -0.5 575,474 - GFF2860 0.64 +1.2 575,474 - GFF2860 0.64 -1.3 575,542 + GFF2860 0.78 -0.3 575,542 + GFF2860 0.78 -0.8 575,542 + GFF2860 0.78 -0.8 575,543 - GFF2860 0.78 +0.2 575,560 + GFF2860 0.81 +0.3 575,560 + GFF2860 0.81 -0.5 575,561 - GFF2860 0.81 +1.5 575,615 - -0.6 575,706 + -2.3 575,706 + -0.7 575,706 + +0.2 575,707 - +0.3 575,707 - -2.1 575,859 + GFF2861 0.16 +0.8 575,860 - GFF2861 0.16 -0.5 575,860 - GFF2861 0.16 +1.0 575,860 - GFF2861 0.16 +1.2 575,934 + GFF2861 0.21 +0.4 575,935 - GFF2861 0.21 +0.5 575,990 + GFF2861 0.25 -0.7 576,004 - GFF2861 0.26 +0.1 576,078 + GFF2861 0.32 +0.4 576,078 + GFF2861 0.32 -0.1 576,078 + GFF2861 0.32 +0.0
Or see this region's nucleotide sequence