Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2835 and GFF2836 are separated by 15 nucleotides GFF2836 and GFF2837 overlap by 1 nucleotides GFF2837 and GFF2838 are separated by 11 nucleotides
GFF2835 - Acetyl-CoA:oxalate CoA-transferase, at 544,532 to 545,746
GFF2835
GFF2836 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 545,762 to 546,553
GFF2836
GFF2837 - Caffeyl-CoA reductase-Etf complex subunit CarC, at 546,553 to 547,758
GFF2837
GFF2838 - hypothetical protein, at 547,770 to 548,897
GFF2838
Position (kb) 546
547
548 Strain fitness (log2 ratio) -1
0
1
2 at 545.580 kb on + strand, within GFF2835 at 545.581 kb on - strand, within GFF2835 at 545.581 kb on - strand, within GFF2835 at 545.811 kb on + strand at 545.811 kb on + strand at 545.812 kb on - strand at 546.051 kb on + strand, within GFF2836 at 546.052 kb on - strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.229 kb on - strand, within GFF2836 at 546.229 kb on - strand, within GFF2836 at 546.229 kb on - strand, within GFF2836 at 546.647 kb on + strand at 546.648 kb on - strand at 546.648 kb on - strand at 546.648 kb on - strand at 547.129 kb on + strand, within GFF2837 at 547.130 kb on - strand, within GFF2837 at 547.512 kb on - strand, within GFF2837 at 547.512 kb on - strand, within GFF2837 at 547.843 kb on + strand at 547.972 kb on + strand, within GFF2838 at 547.973 kb on - strand, within GFF2838
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 545,580 + GFF2835 0.86 +0.4 545,581 - GFF2835 0.86 -1.4 545,581 - GFF2835 0.86 +0.6 545,811 + +0.9 545,811 + -1.1 545,812 - -0.6 546,051 + GFF2836 0.36 -0.1 546,052 - GFF2836 0.37 -1.5 546,228 + GFF2836 0.59 +0.1 546,228 + GFF2836 0.59 -0.3 546,228 + GFF2836 0.59 +0.1 546,228 + GFF2836 0.59 -0.4 546,228 + GFF2836 0.59 -0.9 546,228 + GFF2836 0.59 -0.2 546,229 - GFF2836 0.59 +0.8 546,229 - GFF2836 0.59 -0.4 546,229 - GFF2836 0.59 +0.4 546,647 + +0.5 546,648 - +0.1 546,648 - +0.4 546,648 - -0.5 547,129 + GFF2837 0.48 +1.8 547,130 - GFF2837 0.48 -0.3 547,512 - GFF2837 0.80 -0.8 547,512 - GFF2837 0.80 -0.1 547,843 + -0.3 547,972 + GFF2838 0.18 +0.8 547,973 - GFF2838 0.18 -0.8
Or see this region's nucleotide sequence