Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2822 and GFF2823 are separated by 301 nucleotides GFF2823 and GFF2824 are separated by 13 nucleotides GFF2824 and GFF2825 are separated by 84 nucleotides
GFF2822 - Anaerobic nitric oxide reductase transcription regulator NorR, at 530,756 to 532,144
GFF2822
GFF2823 - putative 3-hydroxybutyryl-CoA dehydrogenase, at 532,446 to 533,354
GFF2823
GFF2824 - D-beta-hydroxybutyrate dehydrogenase, at 533,368 to 534,147
GFF2824
GFF2825 - hypothetical protein, at 534,232 to 535,440
GFF2825
Position (kb) 532
533
534 Strain fitness (log2 ratio) -1
0
1
2 at 531.792 kb on + strand, within GFF2822 at 531.793 kb on - strand, within GFF2822 at 531.803 kb on - strand, within GFF2822 at 531.891 kb on + strand, within GFF2822 at 531.892 kb on - strand, within GFF2822 at 532.646 kb on + strand, within GFF2823 at 532.647 kb on - strand, within GFF2823 at 532.802 kb on + strand, within GFF2823 at 533.172 kb on + strand, within GFF2823 at 533.172 kb on + strand, within GFF2823 at 533.173 kb on - strand, within GFF2823 at 533.173 kb on - strand, within GFF2823 at 533.173 kb on - strand, within GFF2823 at 533.540 kb on - strand, within GFF2824 at 533.540 kb on - strand, within GFF2824 at 533.540 kb on - strand, within GFF2824 at 533.540 kb on - strand, within GFF2824 at 533.540 kb on - strand, within GFF2824 at 533.541 kb on + strand, within GFF2824 at 533.828 kb on - strand, within GFF2824 at 533.828 kb on - strand, within GFF2824 at 533.828 kb on - strand, within GFF2824 at 534.133 kb on + strand at 534.133 kb on + strand at 534.213 kb on + strand at 534.214 kb on - strand at 534.214 kb on - strand at 534.227 kb on + strand at 534.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 531,792 + GFF2822 0.75 -0.9 531,793 - GFF2822 0.75 +0.1 531,803 - GFF2822 0.75 -0.3 531,891 + GFF2822 0.82 -1.4 531,892 - GFF2822 0.82 -0.7 532,646 + GFF2823 0.22 +0.5 532,647 - GFF2823 0.22 +0.4 532,802 + GFF2823 0.39 -0.5 533,172 + GFF2823 0.80 +0.1 533,172 + GFF2823 0.80 -0.6 533,173 - GFF2823 0.80 -1.1 533,173 - GFF2823 0.80 -0.9 533,173 - GFF2823 0.80 +0.1 533,540 - GFF2824 0.22 +0.4 533,540 - GFF2824 0.22 +0.2 533,540 - GFF2824 0.22 +0.4 533,540 - GFF2824 0.22 -0.9 533,540 - GFF2824 0.22 -0.3 533,541 + GFF2824 0.22 +0.7 533,828 - GFF2824 0.59 +1.8 533,828 - GFF2824 0.59 +0.9 533,828 - GFF2824 0.59 -0.1 534,133 + -0.7 534,133 + -1.3 534,213 + -0.5 534,214 - +0.4 534,214 - -0.6 534,227 + -0.2 534,228 - +0.0
Or see this region's nucleotide sequence