Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2797 and GFF2798 are separated by 48 nucleotides GFF2798 and GFF2799 are separated by 429 nucleotides
GFF2797 - Biphenyl-2,3-diol 1,2-dioxygenase, at 502,168 to 503,136
GFF2797
GFF2798 - Proline/betaine transporter, at 503,185 to 504,489
GFF2798
GFF2799 - Glycine cleavage system transcriptional activator, at 504,919 to 505,836
GFF2799
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 502.286 kb on + strand, within GFF2797 at 502.287 kb on - strand, within GFF2797 at 502.409 kb on + strand, within GFF2797 at 502.409 kb on + strand, within GFF2797 at 502.488 kb on - strand, within GFF2797 at 502.488 kb on - strand, within GFF2797 at 502.488 kb on - strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.602 kb on - strand, within GFF2797 at 502.602 kb on - strand, within GFF2797 at 502.611 kb on - strand, within GFF2797 at 502.626 kb on - strand, within GFF2797 at 502.658 kb on + strand, within GFF2797 at 502.658 kb on + strand, within GFF2797 at 502.659 kb on - strand, within GFF2797 at 502.659 kb on - strand, within GFF2797 at 503.114 kb on + strand at 503.267 kb on + strand at 503.268 kb on - strand at 503.268 kb on - strand at 503.268 kb on - strand at 503.360 kb on + strand, within GFF2798 at 503.360 kb on + strand, within GFF2798 at 503.361 kb on - strand, within GFF2798 at 503.361 kb on - strand, within GFF2798 at 503.361 kb on - strand, within GFF2798 at 503.661 kb on - strand, within GFF2798 at 503.909 kb on + strand, within GFF2798 at 503.940 kb on - strand, within GFF2798 at 504.048 kb on - strand, within GFF2798 at 504.048 kb on - strand, within GFF2798 at 504.048 kb on - strand, within GFF2798 at 504.048 kb on - strand, within GFF2798 at 504.144 kb on - strand, within GFF2798 at 504.144 kb on - strand, within GFF2798 at 504.180 kb on + strand, within GFF2798 at 504.180 kb on + strand, within GFF2798 at 504.180 kb on + strand, within GFF2798 at 504.180 kb on + strand, within GFF2798 at 504.180 kb on + strand, within GFF2798 at 504.181 kb on - strand, within GFF2798 at 504.181 kb on - strand, within GFF2798 at 504.314 kb on + strand, within GFF2798 at 504.315 kb on - strand, within GFF2798 at 504.351 kb on - strand, within GFF2798 at 504.369 kb on - strand at 504.473 kb on + strand at 504.473 kb on + strand at 504.474 kb on - strand at 504.474 kb on - strand at 504.508 kb on + strand at 504.508 kb on + strand at 504.510 kb on + strand at 504.511 kb on + strand at 504.511 kb on + strand at 504.512 kb on - strand at 504.516 kb on - strand at 504.516 kb on - strand at 504.534 kb on - strand at 504.661 kb on + strand at 504.661 kb on + strand at 504.662 kb on - strand at 504.755 kb on + strand at 504.783 kb on + strand at 504.783 kb on + strand at 504.783 kb on + strand at 504.784 kb on - strand at 504.784 kb on - strand at 504.784 kb on - strand at 504.786 kb on + strand at 504.786 kb on + strand at 504.787 kb on - strand at 504.969 kb on - strand at 505.007 kb on + strand at 505.008 kb on - strand at 505.008 kb on - strand at 505.008 kb on - strand at 505.067 kb on + strand, within GFF2799 at 505.068 kb on - strand, within GFF2799 at 505.068 kb on - strand, within GFF2799 at 505.068 kb on - strand, within GFF2799 at 505.169 kb on + strand, within GFF2799 at 505.170 kb on - strand, within GFF2799 at 505.361 kb on + strand, within GFF2799 at 505.362 kb on - strand, within GFF2799
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 502,286 + GFF2797 0.12 -0.5 502,287 - GFF2797 0.12 +1.1 502,409 + GFF2797 0.25 +0.6 502,409 + GFF2797 0.25 +0.7 502,488 - GFF2797 0.33 +1.7 502,488 - GFF2797 0.33 +0.7 502,488 - GFF2797 0.33 -1.1 502,601 + GFF2797 0.45 -0.5 502,601 + GFF2797 0.45 -0.1 502,601 + GFF2797 0.45 +0.7 502,601 + GFF2797 0.45 +0.4 502,602 - GFF2797 0.45 +0.0 502,602 - GFF2797 0.45 -1.4 502,611 - GFF2797 0.46 -0.2 502,626 - GFF2797 0.47 +0.4 502,658 + GFF2797 0.51 -0.6 502,658 + GFF2797 0.51 -0.8 502,659 - GFF2797 0.51 -0.2 502,659 - GFF2797 0.51 +0.6 503,114 + -0.3 503,267 + -1.5 503,268 - -1.1 503,268 - +0.5 503,268 - -0.6 503,360 + GFF2798 0.13 -1.0 503,360 + GFF2798 0.13 +0.5 503,361 - GFF2798 0.13 -0.0 503,361 - GFF2798 0.13 -1.5 503,361 - GFF2798 0.13 +0.3 503,661 - GFF2798 0.36 +0.1 503,909 + GFF2798 0.55 -0.3 503,940 - GFF2798 0.58 -0.3 504,048 - GFF2798 0.66 -0.3 504,048 - GFF2798 0.66 -0.1 504,048 - GFF2798 0.66 -0.6 504,048 - GFF2798 0.66 -1.7 504,144 - GFF2798 0.73 +0.9 504,144 - GFF2798 0.73 +0.4 504,180 + GFF2798 0.76 +1.4 504,180 + GFF2798 0.76 -0.0 504,180 + GFF2798 0.76 -0.3 504,180 + GFF2798 0.76 +0.6 504,180 + GFF2798 0.76 +0.3 504,181 - GFF2798 0.76 -0.3 504,181 - GFF2798 0.76 -0.4 504,314 + GFF2798 0.87 +0.4 504,315 - GFF2798 0.87 +0.1 504,351 - GFF2798 0.89 -0.0 504,369 - -0.1 504,473 + +1.8 504,473 + +0.4 504,474 - +1.2 504,474 - -0.4 504,508 + -0.3 504,508 + -0.3 504,510 + +0.4 504,511 + -0.4 504,511 + -0.3 504,512 - -0.3 504,516 - +1.2 504,516 - +1.2 504,534 - +0.4 504,661 + -3.0 504,661 + -0.5 504,662 - -1.0 504,755 + +0.1 504,783 + -0.5 504,783 + +0.0 504,783 + -1.5 504,784 - -0.3 504,784 - -0.2 504,784 - +0.1 504,786 + -0.6 504,786 + -0.5 504,787 - +0.5 504,969 - -0.3 505,007 + -0.6 505,008 - +0.5 505,008 - +0.2 505,008 - +3.8 505,067 + GFF2799 0.16 +0.4 505,068 - GFF2799 0.16 +0.5 505,068 - GFF2799 0.16 -0.7 505,068 - GFF2799 0.16 -0.1 505,169 + GFF2799 0.27 +0.5 505,170 - GFF2799 0.27 +0.5 505,361 + GFF2799 0.48 -0.6 505,362 - GFF2799 0.48 +0.1
Or see this region's nucleotide sequence