Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2783 and GFF2784 are separated by 120 nucleotides GFF2784 and GFF2785 are separated by 11 nucleotides GFF2785 and GFF2786 overlap by 8 nucleotides
GFF2783 - hypothetical protein, at 486,124 to 487,110
GFF2783
GFF2784 - Putative aliphatic sulfonates transport permease protein SsuC, at 487,231 to 487,962
GFF2784
GFF2785 - Nitrate import ATP-binding protein NrtD, at 487,974 to 488,807
GFF2785
GFF2786 - Allophanate hydrolase, at 488,800 to 490,176
GFF2786
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1 at 487.096 kb on + strand at 487.097 kb on - strand at 487.664 kb on + strand, within GFF2784 at 487.664 kb on + strand, within GFF2784 at 487.664 kb on + strand, within GFF2784 at 487.664 kb on + strand, within GFF2784 at 487.665 kb on - strand, within GFF2784 at 487.665 kb on - strand, within GFF2784 at 487.665 kb on - strand, within GFF2784 at 487.665 kb on - strand, within GFF2784 at 487.775 kb on - strand, within GFF2784 at 487.780 kb on + strand, within GFF2784 at 487.780 kb on + strand, within GFF2784 at 487.780 kb on + strand, within GFF2784 at 487.781 kb on - strand, within GFF2784 at 487.781 kb on - strand, within GFF2784 at 487.828 kb on + strand, within GFF2784 at 487.828 kb on + strand, within GFF2784 at 487.828 kb on + strand, within GFF2784 at 487.829 kb on - strand, within GFF2784 at 487.829 kb on - strand, within GFF2784 at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.950 kb on - strand at 487.950 kb on - strand at 487.950 kb on - strand at 487.971 kb on + strand at 488.196 kb on + strand, within GFF2785 at 488.196 kb on + strand, within GFF2785 at 488.196 kb on + strand, within GFF2785 at 488.196 kb on + strand, within GFF2785 at 488.197 kb on - strand, within GFF2785 at 488.197 kb on - strand, within GFF2785 at 488.600 kb on + strand, within GFF2785 at 488.661 kb on - strand, within GFF2785 at 489.427 kb on + strand, within GFF2786 at 489.704 kb on - strand, within GFF2786 at 489.706 kb on + strand, within GFF2786 at 489.775 kb on + strand, within GFF2786 at 489.775 kb on + strand, within GFF2786 at 489.776 kb on - strand, within GFF2786
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 487,096 + -0.2 487,097 - -1.3 487,664 + GFF2784 0.59 +0.1 487,664 + GFF2784 0.59 -0.1 487,664 + GFF2784 0.59 +0.3 487,664 + GFF2784 0.59 +0.4 487,665 - GFF2784 0.59 -0.6 487,665 - GFF2784 0.59 +0.1 487,665 - GFF2784 0.59 +0.3 487,665 - GFF2784 0.59 +0.2 487,775 - GFF2784 0.74 -0.2 487,780 + GFF2784 0.75 -1.3 487,780 + GFF2784 0.75 -0.8 487,780 + GFF2784 0.75 -0.7 487,781 - GFF2784 0.75 +0.7 487,781 - GFF2784 0.75 -1.3 487,828 + GFF2784 0.82 -1.8 487,828 + GFF2784 0.82 +0.1 487,828 + GFF2784 0.82 -0.9 487,829 - GFF2784 0.82 +0.5 487,829 - GFF2784 0.82 +0.1 487,949 + +0.8 487,949 + -0.2 487,949 + -1.0 487,949 + +0.5 487,949 + +0.3 487,949 + -0.5 487,950 - +0.5 487,950 - +0.0 487,950 - -0.6 487,971 + +0.4 488,196 + GFF2785 0.27 -0.3 488,196 + GFF2785 0.27 +0.7 488,196 + GFF2785 0.27 -0.8 488,196 + GFF2785 0.27 +0.1 488,197 - GFF2785 0.27 -0.4 488,197 - GFF2785 0.27 +1.2 488,600 + GFF2785 0.75 +0.1 488,661 - GFF2785 0.82 +0.1 489,427 + GFF2786 0.46 -0.5 489,704 - GFF2786 0.66 +1.4 489,706 + GFF2786 0.66 +0.5 489,775 + GFF2786 0.71 -1.9 489,775 + GFF2786 0.71 -0.8 489,776 - GFF2786 0.71 -0.0
Or see this region's nucleotide sequence