Strain Fitness in Xanthobacter sp. DMC5 around GFF2779

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2778 and GFF2779 are separated by 253 nucleotidesGFF2779 and GFF2780 are separated by 15 nucleotidesGFF2780 and GFF2781 are separated by 9 nucleotidesGFF2781 and GFF2782 overlap by 8 nucleotides GFF2778 - Nodulation protein D 2, at 482,150 to 483,079 GFF2778 GFF2779 - Arsenical-resistance protein Acr3, at 483,333 to 484,385 GFF2779 GFF2780 - Arsenate reductase, at 484,401 to 484,823 GFF2780 GFF2781 - Arsenate reductase, at 484,833 to 485,372 GFF2781 GFF2782 - hypothetical protein, at 485,365 to 485,727 GFF2782 Position (kb) 483 484 485Strain fitness (log2 ratio) -2 -1 0 1at 482.489 kb on + strand, within GFF2778at 482.489 kb on + strand, within GFF2778at 482.490 kb on - strand, within GFF2778at 482.669 kb on + strand, within GFF2778at 482.670 kb on - strand, within GFF2778at 482.670 kb on - strand, within GFF2778at 482.681 kb on + strand, within GFF2778at 482.681 kb on + strand, within GFF2778at 482.682 kb on - strand, within GFF2778at 482.682 kb on - strand, within GFF2778at 482.729 kb on + strand, within GFF2778at 482.730 kb on - strand, within GFF2778at 482.730 kb on - strand, within GFF2778at 482.730 kb on - strand, within GFF2778at 482.755 kb on - strand, within GFF2778at 482.906 kb on + strand, within GFF2778at 482.906 kb on + strand, within GFF2778at 482.906 kb on + strand, within GFF2778at 482.907 kb on - strand, within GFF2778at 482.907 kb on - strand, within GFF2778at 482.907 kb on - strand, within GFF2778at 482.912 kb on + strand, within GFF2778at 482.912 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 483.066 kb on + strandat 483.066 kb on + strandat 483.066 kb on + strandat 483.066 kb on + strandat 483.067 kb on - strandat 483.067 kb on - strandat 483.067 kb on - strandat 483.067 kb on - strandat 483.120 kb on + strandat 483.121 kb on - strandat 483.121 kb on - strandat 483.271 kb on + strandat 483.272 kb on - strandat 483.285 kb on + strandat 483.286 kb on - strandat 483.286 kb on - strandat 483.314 kb on + strandat 483.314 kb on + strandat 483.334 kb on + strandat 483.376 kb on + strandat 483.590 kb on - strand, within GFF2779at 483.610 kb on + strand, within GFF2779at 483.829 kb on + strand, within GFF2779at 483.829 kb on + strand, within GFF2779at 483.829 kb on + strand, within GFF2779at 483.829 kb on + strand, within GFF2779at 483.830 kb on - strand, within GFF2779at 483.830 kb on - strand, within GFF2779at 483.830 kb on - strand, within GFF2779at 484.045 kb on + strand, within GFF2779at 484.326 kb on + strandat 484.326 kb on + strandat 484.327 kb on - strandat 484.327 kb on - strandat 484.366 kb on + strandat 484.366 kb on + strandat 484.366 kb on + strandat 484.367 kb on - strandat 484.398 kb on + strandat 484.398 kb on + strandat 484.399 kb on - strandat 484.734 kb on + strand, within GFF2780at 484.734 kb on + strand, within GFF2780at 484.734 kb on + strand, within GFF2780at 484.735 kb on - strand, within GFF2780at 484.807 kb on + strandat 484.808 kb on - strandat 484.808 kb on - strandat 484.964 kb on - strand, within GFF2781at 484.964 kb on - strand, within GFF2781at 485.173 kb on + strand, within GFF2781at 485.173 kb on + strand, within GFF2781at 485.173 kb on + strand, within GFF2781at 485.173 kb on + strand, within GFF2781at 485.174 kb on - strand, within GFF2781at 485.174 kb on - strand, within GFF2781

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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482,489 + GFF2778 0.36 +0.6
482,489 + GFF2778 0.36 +0.2
482,490 - GFF2778 0.37 +0.4
482,669 + GFF2778 0.56 -0.3
482,670 - GFF2778 0.56 -1.2
482,670 - GFF2778 0.56 -0.4
482,681 + GFF2778 0.57 +0.4
482,681 + GFF2778 0.57 -0.7
482,682 - GFF2778 0.57 +0.0
482,682 - GFF2778 0.57 +1.3
482,729 + GFF2778 0.62 +0.2
482,730 - GFF2778 0.62 -0.1
482,730 - GFF2778 0.62 +0.4
482,730 - GFF2778 0.62 +0.1
482,755 - GFF2778 0.65 +0.2
482,906 + GFF2778 0.81 -0.1
482,906 + GFF2778 0.81 -0.3
482,906 + GFF2778 0.81 +0.5
482,907 - GFF2778 0.81 -0.4
482,907 - GFF2778 0.81 +0.3
482,907 - GFF2778 0.81 +0.8
482,912 + GFF2778 0.82 +0.3
482,912 + GFF2778 0.82 -0.9
482,954 + GFF2778 0.86 +1.4
482,954 + GFF2778 0.86 -0.5
482,954 + GFF2778 0.86 +0.5
482,954 + GFF2778 0.86 -0.1
482,954 + GFF2778 0.86 +1.2
482,955 - GFF2778 0.87 -1.1
482,955 - GFF2778 0.87 +1.2
482,955 - GFF2778 0.87 +0.1
482,955 - GFF2778 0.87 +0.5
482,955 - GFF2778 0.87 -0.4
482,955 - GFF2778 0.87 +0.8
483,066 + -0.1
483,066 + +0.1
483,066 + -0.9
483,066 + -0.1
483,067 - +0.3
483,067 - -0.9
483,067 - -0.2
483,067 - +0.8
483,120 + +0.1
483,121 - -0.4
483,121 - -0.8
483,271 + +0.2
483,272 - +0.4
483,285 + -0.2
483,286 - +1.2
483,286 - -1.4
483,314 + -0.1
483,314 + -0.1
483,334 + +0.1
483,376 + +1.3
483,590 - GFF2779 0.24 +0.6
483,610 + GFF2779 0.26 +0.1
483,829 + GFF2779 0.47 -0.7
483,829 + GFF2779 0.47 +0.5
483,829 + GFF2779 0.47 +0.2
483,829 + GFF2779 0.47 -2.1
483,830 - GFF2779 0.47 +0.3
483,830 - GFF2779 0.47 +0.2
483,830 - GFF2779 0.47 -0.4
484,045 + GFF2779 0.68 +0.4
484,326 + +1.1
484,326 + -0.3
484,327 - +0.3
484,327 - -0.1
484,366 + -0.2
484,366 + -0.3
484,366 + +0.6
484,367 - +0.2
484,398 + +0.2
484,398 + +0.5
484,399 - +0.6
484,734 + GFF2780 0.79 -0.4
484,734 + GFF2780 0.79 +0.3
484,734 + GFF2780 0.79 -0.8
484,735 - GFF2780 0.79 -1.0
484,807 + -0.1
484,808 - +0.0
484,808 - +0.6
484,964 - GFF2781 0.24 +0.5
484,964 - GFF2781 0.24 +0.1
485,173 + GFF2781 0.63 +0.2
485,173 + GFF2781 0.63 +0.6
485,173 + GFF2781 0.63 +0.3
485,173 + GFF2781 0.63 +0.3
485,174 - GFF2781 0.63 +0.1
485,174 - GFF2781 0.63 -2.2

Or see this region's nucleotide sequence