Strain Fitness in Xanthobacter sp. DMC5 around GFF2774

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2773 and GFF2774 are separated by 34 nucleotidesGFF2774 and GFF2775 are separated by 165 nucleotides GFF2773 - 3-hydroxyisobutyrate dehydrogenase, at 475,419 to 476,312 GFF2773 GFF2774 - Putative 3-oxopropanoate dehydrogenase, at 476,347 to 477,846 GFF2774 GFF2775 - hypothetical protein, at 478,012 to 479,229 GFF2775 Position (kb) 476 477 478Strain fitness (log2 ratio) -2 -1 0 1 2at 475.417 kb on + strandat 475.417 kb on + strandat 475.417 kb on + strandat 475.418 kb on - strandat 475.642 kb on - strand, within GFF2773at 475.987 kb on - strand, within GFF2773at 476.122 kb on - strand, within GFF2773at 476.122 kb on - strand, within GFF2773at 476.232 kb on + strandat 476.232 kb on + strandat 476.233 kb on - strandat 476.233 kb on - strandat 476.295 kb on + strandat 476.296 kb on - strandat 476.296 kb on - strandat 476.296 kb on - strandat 476.350 kb on + strandat 476.351 kb on - strandat 476.351 kb on - strandat 476.366 kb on - strandat 476.366 kb on - strandat 476.382 kb on - strandat 476.443 kb on + strandat 476.444 kb on - strandat 476.444 kb on - strandat 476.455 kb on + strandat 476.455 kb on + strandat 476.583 kb on + strand, within GFF2774at 476.584 kb on - strand, within GFF2774at 476.584 kb on - strand, within GFF2774at 476.584 kb on - strand, within GFF2774at 476.714 kb on - strand, within GFF2774at 476.714 kb on - strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.743 kb on - strand, within GFF2774at 476.743 kb on - strand, within GFF2774at 477.040 kb on + strand, within GFF2774at 477.040 kb on + strand, within GFF2774at 477.040 kb on + strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.047 kb on - strand, within GFF2774at 477.047 kb on - strand, within GFF2774at 477.069 kb on + strand, within GFF2774at 477.069 kb on + strand, within GFF2774at 477.070 kb on - strand, within GFF2774at 477.070 kb on - strand, within GFF2774at 477.085 kb on + strand, within GFF2774at 477.086 kb on - strand, within GFF2774at 477.086 kb on - strand, within GFF2774at 477.086 kb on - strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.167 kb on - strand, within GFF2774at 477.167 kb on - strand, within GFF2774at 477.167 kb on - strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.431 kb on - strand, within GFF2774at 477.454 kb on - strand, within GFF2774at 477.454 kb on - strand, within GFF2774at 477.565 kb on + strand, within GFF2774at 477.619 kb on + strand, within GFF2774at 477.619 kb on + strand, within GFF2774at 477.619 kb on + strand, within GFF2774at 477.619 kb on + strand, within GFF2774at 477.620 kb on - strand, within GFF2774at 477.754 kb on + strandat 477.754 kb on + strandat 477.755 kb on - strandat 477.980 kb on + strandat 477.980 kb on + strandat 477.981 kb on - strandat 477.981 kb on - strandat 477.991 kb on - strandat 478.020 kb on + strandat 478.020 kb on + strandat 478.020 kb on + strandat 478.126 kb on + strandat 478.126 kb on + strandat 478.450 kb on + strand, within GFF2775at 478.450 kb on + strand, within GFF2775at 478.525 kb on + strand, within GFF2775at 478.525 kb on + strand, within GFF2775at 478.526 kb on - strand, within GFF2775at 478.526 kb on - strand, within GFF2775at 478.840 kb on + strand, within GFF2775at 478.841 kb on - strand, within GFF2775

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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475,417 + -1.4
475,417 + -0.3
475,417 + +0.1
475,418 - +1.1
475,642 - GFF2773 0.25 -0.4
475,987 - GFF2773 0.64 -0.5
476,122 - GFF2773 0.79 +0.1
476,122 - GFF2773 0.79 -2.5
476,232 + -0.1
476,232 + -0.5
476,233 - -1.3
476,233 - +0.1
476,295 + -0.7
476,296 - -0.4
476,296 - -0.0
476,296 - +0.1
476,350 + -0.4
476,351 - +1.3
476,351 - +1.1
476,366 - +0.1
476,366 - +0.3
476,382 - +1.3
476,443 + -0.3
476,444 - +0.4
476,444 - +1.8
476,455 + -0.4
476,455 + -0.3
476,583 + GFF2774 0.16 +0.3
476,584 - GFF2774 0.16 -1.3
476,584 - GFF2774 0.16 +0.5
476,584 - GFF2774 0.16 +0.3
476,714 - GFF2774 0.24 -0.1
476,714 - GFF2774 0.24 +0.5
476,742 + GFF2774 0.26 +0.2
476,742 + GFF2774 0.26 +0.3
476,742 + GFF2774 0.26 -0.8
476,742 + GFF2774 0.26 -0.3
476,742 + GFF2774 0.26 -0.6
476,742 + GFF2774 0.26 -1.7
476,743 - GFF2774 0.26 +0.4
476,743 - GFF2774 0.26 +0.2
477,040 + GFF2774 0.46 -2.2
477,040 + GFF2774 0.46 -0.1
477,040 + GFF2774 0.46 +0.0
477,041 - GFF2774 0.46 -0.3
477,041 - GFF2774 0.46 +0.3
477,041 - GFF2774 0.46 -0.7
477,041 - GFF2774 0.46 -0.1
477,041 - GFF2774 0.46 -0.8
477,041 - GFF2774 0.46 -0.3
477,041 - GFF2774 0.46 +0.8
477,046 + GFF2774 0.47 +0.0
477,046 + GFF2774 0.47 +0.5
477,046 + GFF2774 0.47 -0.6
477,046 + GFF2774 0.47 -0.1
477,047 - GFF2774 0.47 -0.6
477,047 - GFF2774 0.47 +0.0
477,069 + GFF2774 0.48 +0.9
477,069 + GFF2774 0.48 -0.9
477,070 - GFF2774 0.48 +0.8
477,070 - GFF2774 0.48 -0.3
477,085 + GFF2774 0.49 -1.2
477,086 - GFF2774 0.49 +1.4
477,086 - GFF2774 0.49 +0.2
477,086 - GFF2774 0.49 -0.8
477,166 + GFF2774 0.55 -0.8
477,166 + GFF2774 0.55 -0.3
477,166 + GFF2774 0.55 -0.1
477,166 + GFF2774 0.55 +0.7
477,167 - GFF2774 0.55 -1.4
477,167 - GFF2774 0.55 -0.2
477,167 - GFF2774 0.55 +0.1
477,286 + GFF2774 0.63 +0.2
477,286 + GFF2774 0.63 -1.0
477,286 + GFF2774 0.63 +0.1
477,286 + GFF2774 0.63 +1.5
477,287 - GFF2774 0.63 -0.8
477,287 - GFF2774 0.63 -0.2
477,287 - GFF2774 0.63 -0.7
477,287 - GFF2774 0.63 +0.1
477,431 - GFF2774 0.72 -0.9
477,431 - GFF2774 0.72 +0.2
477,431 - GFF2774 0.72 +0.1
477,431 - GFF2774 0.72 -0.3
477,431 - GFF2774 0.72 -0.3
477,431 - GFF2774 0.72 -1.5
477,431 - GFF2774 0.72 -0.8
477,454 - GFF2774 0.74 +0.5
477,454 - GFF2774 0.74 -1.4
477,565 + GFF2774 0.81 +0.1
477,619 + GFF2774 0.85 -0.3
477,619 + GFF2774 0.85 +0.6
477,619 + GFF2774 0.85 -0.8
477,619 + GFF2774 0.85 +1.7
477,620 - GFF2774 0.85 -0.0
477,754 + -1.2
477,754 + -0.7
477,755 - -0.1
477,980 + -1.6
477,980 + -0.1
477,981 - +0.9
477,981 - -0.6
477,991 - -0.0
478,020 + -0.2
478,020 + +0.7
478,020 + +0.0
478,126 + -0.9
478,126 + -0.1
478,450 + GFF2775 0.36 -1.5
478,450 + GFF2775 0.36 +0.2
478,525 + GFF2775 0.42 +2.1
478,525 + GFF2775 0.42 -0.2
478,526 - GFF2775 0.42 -0.6
478,526 - GFF2775 0.42 -0.8
478,840 + GFF2775 0.68 -2.1
478,841 - GFF2775 0.68 -1.4

Or see this region's nucleotide sequence