Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2769 and GFF2770 are separated by 22 nucleotides GFF2770 and GFF2771 overlap by 4 nucleotides
GFF2769 - Fumarate reductase flavoprotein subunit, at 471,154 to 472,596
GFF2769
GFF2770 - hypothetical protein, at 472,619 to 472,921
GFF2770
GFF2771 - hypothetical protein, at 472,918 to 474,348
GFF2771
Position (kb) 472
473 Strain fitness (log2 ratio) -2
-1
0
1 at 471.808 kb on + strand, within GFF2769 at 471.812 kb on - strand, within GFF2769 at 471.830 kb on - strand, within GFF2769 at 471.832 kb on - strand, within GFF2769 at 471.857 kb on - strand, within GFF2769 at 471.857 kb on - strand, within GFF2769 at 471.860 kb on - strand, within GFF2769 at 471.928 kb on + strand, within GFF2769 at 472.054 kb on - strand, within GFF2769 at 472.054 kb on - strand, within GFF2769 at 472.061 kb on - strand, within GFF2769 at 472.108 kb on + strand, within GFF2769 at 472.108 kb on + strand, within GFF2769 at 472.108 kb on + strand, within GFF2769 at 472.109 kb on - strand, within GFF2769 at 472.109 kb on - strand, within GFF2769 at 472.109 kb on - strand, within GFF2769 at 472.109 kb on - strand, within GFF2769 at 472.480 kb on + strand at 472.481 kb on - strand at 472.507 kb on + strand at 472.507 kb on + strand at 472.507 kb on + strand at 472.507 kb on + strand at 472.507 kb on + strand at 472.508 kb on - strand at 472.508 kb on - strand at 472.510 kb on + strand at 472.511 kb on - strand at 472.519 kb on + strand at 472.521 kb on + strand at 472.522 kb on - strand at 472.522 kb on - strand at 472.522 kb on - strand at 472.522 kb on - strand at 472.647 kb on + strand at 472.648 kb on - strand at 472.802 kb on + strand, within GFF2770 at 472.802 kb on + strand, within GFF2770 at 472.803 kb on - strand, within GFF2770 at 472.827 kb on + strand, within GFF2770 at 472.827 kb on + strand, within GFF2770 at 472.827 kb on + strand, within GFF2770 at 472.827 kb on + strand, within GFF2770 at 472.827 kb on + strand, within GFF2770 at 472.828 kb on - strand, within GFF2770 at 472.828 kb on - strand, within GFF2770 at 472.911 kb on + strand at 472.917 kb on + strand at 472.918 kb on - strand at 472.918 kb on - strand at 473.006 kb on - strand at 473.006 kb on - strand at 473.145 kb on - strand, within GFF2771 at 473.299 kb on + strand, within GFF2771 at 473.300 kb on - strand, within GFF2771 at 473.300 kb on - strand, within GFF2771 at 473.300 kb on - strand, within GFF2771 at 473.370 kb on + strand, within GFF2771 at 473.370 kb on + strand, within GFF2771 at 473.371 kb on - strand, within GFF2771 at 473.631 kb on - strand, within GFF2771 at 473.631 kb on - strand, within GFF2771 at 473.710 kb on + strand, within GFF2771 at 473.710 kb on + strand, within GFF2771 at 473.711 kb on - strand, within GFF2771 at 473.711 kb on - strand, within GFF2771 at 473.711 kb on - strand, within GFF2771
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 471,808 + GFF2769 0.45 -0.5 471,812 - GFF2769 0.46 +0.1 471,830 - GFF2769 0.47 -0.7 471,832 - GFF2769 0.47 -0.1 471,857 - GFF2769 0.49 +0.2 471,857 - GFF2769 0.49 -1.9 471,860 - GFF2769 0.49 +0.1 471,928 + GFF2769 0.54 +0.2 472,054 - GFF2769 0.62 +0.4 472,054 - GFF2769 0.62 -0.4 472,061 - GFF2769 0.63 -0.7 472,108 + GFF2769 0.66 -0.4 472,108 + GFF2769 0.66 -0.3 472,108 + GFF2769 0.66 +0.3 472,109 - GFF2769 0.66 -0.1 472,109 - GFF2769 0.66 -0.4 472,109 - GFF2769 0.66 +0.2 472,109 - GFF2769 0.66 -2.3 472,480 + +0.0 472,481 - +0.2 472,507 + +0.4 472,507 + -0.5 472,507 + +1.5 472,507 + -0.1 472,507 + +0.5 472,508 - -0.5 472,508 - +1.3 472,510 + +0.1 472,511 - +0.1 472,519 + -0.7 472,521 + -1.6 472,522 - -0.5 472,522 - +0.1 472,522 - -0.6 472,522 - +0.5 472,647 + +0.4 472,648 - +0.5 472,802 + GFF2770 0.60 -0.2 472,802 + GFF2770 0.60 -0.7 472,803 - GFF2770 0.61 -0.7 472,827 + GFF2770 0.69 +0.7 472,827 + GFF2770 0.69 -0.0 472,827 + GFF2770 0.69 -0.7 472,827 + GFF2770 0.69 +1.4 472,827 + GFF2770 0.69 +0.5 472,828 - GFF2770 0.69 -1.5 472,828 - GFF2770 0.69 +0.1 472,911 + -0.2 472,917 + -0.7 472,918 - +0.1 472,918 - -0.3 473,006 - +1.0 473,006 - -1.3 473,145 - GFF2771 0.16 -0.8 473,299 + GFF2771 0.27 -0.7 473,300 - GFF2771 0.27 -0.1 473,300 - GFF2771 0.27 -0.6 473,300 - GFF2771 0.27 +0.3 473,370 + GFF2771 0.32 +0.2 473,370 + GFF2771 0.32 -0.9 473,371 - GFF2771 0.32 +0.3 473,631 - GFF2771 0.50 +1.1 473,631 - GFF2771 0.50 +0.1 473,710 + GFF2771 0.55 -0.4 473,710 + GFF2771 0.55 +0.3 473,711 - GFF2771 0.55 -0.3 473,711 - GFF2771 0.55 -1.1 473,711 - GFF2771 0.55 +0.8
Or see this region's nucleotide sequence