Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2756 and GFF2757 are separated by 10 nucleotides GFF2757 and GFF2758 overlap by 4 nucleotides GFF2758 and GFF2759 are separated by 48 nucleotides
GFF2756 - HTH-type transcriptional regulator DmlR, at 457,759 to 458,634
GFF2756
GFF2757 - hypothetical protein, at 458,645 to 459,604
GFF2757
GFF2758 - 2,3-dimethylmalate lyase, at 459,601 to 460,476
GFF2758
GFF2759 - Putative aliphatic sulfonates transport permease protein SsuC, at 460,525 to 461,313
GFF2759
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1 at 457.720 kb on + strand at 457.740 kb on + strand at 457.740 kb on + strand at 457.740 kb on + strand at 457.741 kb on - strand at 457.741 kb on - strand at 457.743 kb on - strand at 457.743 kb on - strand at 457.756 kb on - strand at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.994 kb on - strand, within GFF2756 at 458.120 kb on - strand, within GFF2756 at 458.131 kb on - strand, within GFF2756 at 458.235 kb on + strand, within GFF2756 at 458.427 kb on - strand, within GFF2756 at 458.427 kb on - strand, within GFF2756 at 458.561 kb on - strand at 458.561 kb on - strand at 458.811 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.087 kb on + strand, within GFF2757 at 459.387 kb on + strand, within GFF2757 at 459.387 kb on + strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.589 kb on - strand at 460.177 kb on - strand, within GFF2758 at 460.214 kb on + strand, within GFF2758 at 460.214 kb on + strand, within GFF2758 at 460.292 kb on + strand, within GFF2758 at 460.292 kb on + strand, within GFF2758 at 460.292 kb on + strand, within GFF2758 at 460.292 kb on + strand, within GFF2758 at 460.343 kb on + strand, within GFF2758 at 460.344 kb on - strand, within GFF2758 at 460.355 kb on + strand, within GFF2758 at 460.355 kb on + strand, within GFF2758 at 460.355 kb on + strand, within GFF2758 at 460.355 kb on + strand, within GFF2758 at 460.356 kb on - strand, within GFF2758 at 460.356 kb on - strand, within GFF2758 at 460.356 kb on - strand, within GFF2758
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 457,720 + -0.5 457,740 + -0.7 457,740 + -0.8 457,740 + -2.2 457,741 - -0.5 457,741 - -0.5 457,743 - +0.0 457,743 - +0.2 457,756 - -0.1 457,993 + GFF2756 0.27 -0.8 457,993 + GFF2756 0.27 +1.1 457,993 + GFF2756 0.27 -0.3 457,993 + GFF2756 0.27 -0.5 457,993 + GFF2756 0.27 +0.4 457,993 + GFF2756 0.27 -0.4 457,994 - GFF2756 0.27 -1.2 458,120 - GFF2756 0.41 -0.4 458,131 - GFF2756 0.42 +0.7 458,235 + GFF2756 0.54 +1.2 458,427 - GFF2756 0.76 +0.2 458,427 - GFF2756 0.76 -1.7 458,561 - -0.5 458,561 - +1.0 458,811 + GFF2757 0.17 -0.7 459,018 + GFF2757 0.39 +0.1 459,018 + GFF2757 0.39 +0.1 459,018 + GFF2757 0.39 -0.4 459,018 + GFF2757 0.39 -0.6 459,018 + GFF2757 0.39 +0.2 459,087 + GFF2757 0.46 +0.1 459,387 + GFF2757 0.77 +0.2 459,387 + GFF2757 0.77 +1.2 459,388 - GFF2757 0.77 -0.9 459,388 - GFF2757 0.77 -0.4 459,388 - GFF2757 0.77 +1.1 459,388 - GFF2757 0.77 +0.0 459,388 - GFF2757 0.77 +0.4 459,589 - -1.1 460,177 - GFF2758 0.66 +0.4 460,214 + GFF2758 0.70 -0.3 460,214 + GFF2758 0.70 +0.3 460,292 + GFF2758 0.79 -0.5 460,292 + GFF2758 0.79 +0.6 460,292 + GFF2758 0.79 -0.3 460,292 + GFF2758 0.79 +0.5 460,343 + GFF2758 0.85 -0.2 460,344 - GFF2758 0.85 -1.2 460,355 + GFF2758 0.86 +0.0 460,355 + GFF2758 0.86 +0.1 460,355 + GFF2758 0.86 -0.3 460,355 + GFF2758 0.86 -0.5 460,356 - GFF2758 0.86 -0.6 460,356 - GFF2758 0.86 +0.3 460,356 - GFF2758 0.86 +0.3
Or see this region's nucleotide sequence