Strain Fitness in Xanthobacter sp. DMC5 around GFF2756

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2755 and GFF2756 are separated by 245 nucleotidesGFF2756 and GFF2757 are separated by 10 nucleotidesGFF2757 and GFF2758 overlap by 4 nucleotides GFF2755 - Soluble epoxide hydrolase, at 456,650 to 457,513 GFF2755 GFF2756 - HTH-type transcriptional regulator DmlR, at 457,759 to 458,634 GFF2756 GFF2757 - hypothetical protein, at 458,645 to 459,604 GFF2757 GFF2758 - 2,3-dimethylmalate lyase, at 459,601 to 460,476 GFF2758 Position (kb) 457 458 459Strain fitness (log2 ratio) -2 -1 0 1at 456.903 kb on + strand, within GFF2755at 456.942 kb on + strand, within GFF2755at 456.942 kb on + strand, within GFF2755at 456.943 kb on - strand, within GFF2755at 456.954 kb on + strand, within GFF2755at 456.954 kb on + strand, within GFF2755at 456.954 kb on + strand, within GFF2755at 456.954 kb on + strand, within GFF2755at 456.954 kb on + strand, within GFF2755at 456.954 kb on + strand, within GFF2755at 456.954 kb on + strand, within GFF2755at 456.954 kb on + strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 456.955 kb on - strand, within GFF2755at 457.332 kb on + strand, within GFF2755at 457.332 kb on + strand, within GFF2755at 457.363 kb on - strand, within GFF2755at 457.461 kb on + strandat 457.462 kb on - strandat 457.492 kb on + strandat 457.492 kb on + strandat 457.492 kb on + strandat 457.493 kb on - strandat 457.493 kb on - strandat 457.493 kb on - strandat 457.493 kb on - strandat 457.493 kb on - strandat 457.493 kb on - strandat 457.493 kb on - strandat 457.720 kb on + strandat 457.740 kb on + strandat 457.740 kb on + strandat 457.740 kb on + strandat 457.741 kb on - strandat 457.741 kb on - strandat 457.743 kb on - strandat 457.743 kb on - strandat 457.756 kb on - strandat 457.993 kb on + strand, within GFF2756at 457.993 kb on + strand, within GFF2756at 457.993 kb on + strand, within GFF2756at 457.993 kb on + strand, within GFF2756at 457.993 kb on + strand, within GFF2756at 457.993 kb on + strand, within GFF2756at 457.994 kb on - strand, within GFF2756at 458.120 kb on - strand, within GFF2756at 458.131 kb on - strand, within GFF2756at 458.235 kb on + strand, within GFF2756at 458.427 kb on - strand, within GFF2756at 458.427 kb on - strand, within GFF2756at 458.561 kb on - strandat 458.561 kb on - strandat 458.811 kb on + strand, within GFF2757at 459.018 kb on + strand, within GFF2757at 459.018 kb on + strand, within GFF2757at 459.018 kb on + strand, within GFF2757at 459.018 kb on + strand, within GFF2757at 459.018 kb on + strand, within GFF2757at 459.087 kb on + strand, within GFF2757at 459.387 kb on + strand, within GFF2757at 459.387 kb on + strand, within GFF2757at 459.388 kb on - strand, within GFF2757at 459.388 kb on - strand, within GFF2757at 459.388 kb on - strand, within GFF2757at 459.388 kb on - strand, within GFF2757at 459.388 kb on - strand, within GFF2757at 459.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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456,903 + GFF2755 0.29 -0.1
456,942 + GFF2755 0.34 +0.6
456,942 + GFF2755 0.34 -1.1
456,943 - GFF2755 0.34 -0.7
456,954 + GFF2755 0.35 +0.5
456,954 + GFF2755 0.35 +0.6
456,954 + GFF2755 0.35 +0.7
456,954 + GFF2755 0.35 -1.3
456,954 + GFF2755 0.35 -1.4
456,954 + GFF2755 0.35 -1.9
456,954 + GFF2755 0.35 -0.8
456,954 + GFF2755 0.35 -0.2
456,955 - GFF2755 0.35 -0.3
456,955 - GFF2755 0.35 -1.3
456,955 - GFF2755 0.35 +0.1
456,955 - GFF2755 0.35 -0.1
456,955 - GFF2755 0.35 +0.1
456,955 - GFF2755 0.35 -0.0
456,955 - GFF2755 0.35 +0.7
456,955 - GFF2755 0.35 -0.9
456,955 - GFF2755 0.35 -1.9
456,955 - GFF2755 0.35 +0.3
456,955 - GFF2755 0.35 -0.2
457,332 + GFF2755 0.79 +0.4
457,332 + GFF2755 0.79 +0.2
457,363 - GFF2755 0.83 +1.7
457,461 + +0.2
457,462 - -1.0
457,492 + -0.8
457,492 + +1.2
457,492 + +0.7
457,493 - +0.0
457,493 - -0.3
457,493 - +1.5
457,493 - -0.1
457,493 - -1.0
457,493 - -0.2
457,493 - +0.1
457,720 + -0.5
457,740 + -0.7
457,740 + -0.8
457,740 + -2.2
457,741 - -0.5
457,741 - -0.5
457,743 - +0.0
457,743 - +0.2
457,756 - -0.1
457,993 + GFF2756 0.27 -0.8
457,993 + GFF2756 0.27 +1.1
457,993 + GFF2756 0.27 -0.3
457,993 + GFF2756 0.27 -0.5
457,993 + GFF2756 0.27 +0.4
457,993 + GFF2756 0.27 -0.4
457,994 - GFF2756 0.27 -1.2
458,120 - GFF2756 0.41 -0.4
458,131 - GFF2756 0.42 +0.7
458,235 + GFF2756 0.54 +1.2
458,427 - GFF2756 0.76 +0.2
458,427 - GFF2756 0.76 -1.7
458,561 - -0.5
458,561 - +1.0
458,811 + GFF2757 0.17 -0.7
459,018 + GFF2757 0.39 +0.1
459,018 + GFF2757 0.39 +0.1
459,018 + GFF2757 0.39 -0.4
459,018 + GFF2757 0.39 -0.6
459,018 + GFF2757 0.39 +0.2
459,087 + GFF2757 0.46 +0.1
459,387 + GFF2757 0.77 +0.2
459,387 + GFF2757 0.77 +1.2
459,388 - GFF2757 0.77 -0.9
459,388 - GFF2757 0.77 -0.4
459,388 - GFF2757 0.77 +1.1
459,388 - GFF2757 0.77 +0.0
459,388 - GFF2757 0.77 +0.4
459,589 - -1.1

Or see this region's nucleotide sequence