Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2753 and GFF2754 are separated by 169 nucleotides GFF2754 and GFF2755 are separated by 44 nucleotides GFF2755 and GFF2756 are separated by 245 nucleotides
GFF2753 - hypothetical protein, at 454,844 to 455,731
GFF2753
GFF2754 - hypothetical protein, at 455,901 to 456,605
GFF2754
GFF2755 - Soluble epoxide hydrolase, at 456,650 to 457,513
GFF2755
GFF2756 - HTH-type transcriptional regulator DmlR, at 457,759 to 458,634
GFF2756
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1 at 455.696 kb on + strand at 455.696 kb on + strand at 455.696 kb on + strand at 455.697 kb on - strand at 456.068 kb on + strand, within GFF2754 at 456.073 kb on + strand, within GFF2754 at 456.073 kb on + strand, within GFF2754 at 456.074 kb on - strand, within GFF2754 at 456.074 kb on - strand, within GFF2754 at 456.334 kb on + strand, within GFF2754 at 456.334 kb on + strand, within GFF2754 at 456.334 kb on + strand, within GFF2754 at 456.334 kb on + strand, within GFF2754 at 456.335 kb on - strand, within GFF2754 at 456.335 kb on - strand, within GFF2754 at 456.335 kb on - strand, within GFF2754 at 456.335 kb on - strand, within GFF2754 at 456.520 kb on + strand, within GFF2754 at 456.521 kb on - strand, within GFF2754 at 456.903 kb on + strand, within GFF2755 at 456.942 kb on + strand, within GFF2755 at 456.942 kb on + strand, within GFF2755 at 456.943 kb on - strand, within GFF2755 at 456.954 kb on + strand, within GFF2755 at 456.954 kb on + strand, within GFF2755 at 456.954 kb on + strand, within GFF2755 at 456.954 kb on + strand, within GFF2755 at 456.954 kb on + strand, within GFF2755 at 456.954 kb on + strand, within GFF2755 at 456.954 kb on + strand, within GFF2755 at 456.954 kb on + strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 456.955 kb on - strand, within GFF2755 at 457.332 kb on + strand, within GFF2755 at 457.332 kb on + strand, within GFF2755 at 457.363 kb on - strand, within GFF2755 at 457.461 kb on + strand at 457.462 kb on - strand at 457.492 kb on + strand at 457.492 kb on + strand at 457.492 kb on + strand at 457.493 kb on - strand at 457.493 kb on - strand at 457.493 kb on - strand at 457.493 kb on - strand at 457.493 kb on - strand at 457.493 kb on - strand at 457.493 kb on - strand at 457.720 kb on + strand at 457.740 kb on + strand at 457.740 kb on + strand at 457.740 kb on + strand at 457.741 kb on - strand at 457.741 kb on - strand at 457.743 kb on - strand at 457.743 kb on - strand at 457.756 kb on - strand at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.993 kb on + strand, within GFF2756 at 457.994 kb on - strand, within GFF2756 at 458.120 kb on - strand, within GFF2756 at 458.131 kb on - strand, within GFF2756 at 458.235 kb on + strand, within GFF2756 at 458.427 kb on - strand, within GFF2756 at 458.427 kb on - strand, within GFF2756
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 455,696 + +1.6 455,696 + -1.0 455,696 + +0.1 455,697 - -0.2 456,068 + GFF2754 0.24 -0.5 456,073 + GFF2754 0.24 +0.4 456,073 + GFF2754 0.24 -0.0 456,074 - GFF2754 0.25 +0.4 456,074 - GFF2754 0.25 +0.4 456,334 + GFF2754 0.61 -1.8 456,334 + GFF2754 0.61 +1.0 456,334 + GFF2754 0.61 +0.1 456,334 + GFF2754 0.61 -0.6 456,335 - GFF2754 0.62 -0.2 456,335 - GFF2754 0.62 -0.3 456,335 - GFF2754 0.62 +1.1 456,335 - GFF2754 0.62 -0.2 456,520 + GFF2754 0.88 -1.5 456,521 - GFF2754 0.88 +0.1 456,903 + GFF2755 0.29 -0.1 456,942 + GFF2755 0.34 +0.6 456,942 + GFF2755 0.34 -1.1 456,943 - GFF2755 0.34 -0.7 456,954 + GFF2755 0.35 +0.5 456,954 + GFF2755 0.35 +0.6 456,954 + GFF2755 0.35 +0.7 456,954 + GFF2755 0.35 -1.3 456,954 + GFF2755 0.35 -1.4 456,954 + GFF2755 0.35 -1.9 456,954 + GFF2755 0.35 -0.8 456,954 + GFF2755 0.35 -0.2 456,955 - GFF2755 0.35 -0.3 456,955 - GFF2755 0.35 -1.3 456,955 - GFF2755 0.35 +0.1 456,955 - GFF2755 0.35 -0.1 456,955 - GFF2755 0.35 +0.1 456,955 - GFF2755 0.35 -0.0 456,955 - GFF2755 0.35 +0.7 456,955 - GFF2755 0.35 -0.9 456,955 - GFF2755 0.35 -1.9 456,955 - GFF2755 0.35 +0.3 456,955 - GFF2755 0.35 -0.2 457,332 + GFF2755 0.79 +0.4 457,332 + GFF2755 0.79 +0.2 457,363 - GFF2755 0.83 +1.7 457,461 + +0.2 457,462 - -1.0 457,492 + -0.8 457,492 + +1.2 457,492 + +0.7 457,493 - +0.0 457,493 - -0.3 457,493 - +1.5 457,493 - -0.1 457,493 - -1.0 457,493 - -0.2 457,493 - +0.1 457,720 + -0.5 457,740 + -0.7 457,740 + -0.8 457,740 + -2.2 457,741 - -0.5 457,741 - -0.5 457,743 - +0.0 457,743 - +0.2 457,756 - -0.1 457,993 + GFF2756 0.27 -0.8 457,993 + GFF2756 0.27 +1.1 457,993 + GFF2756 0.27 -0.3 457,993 + GFF2756 0.27 -0.5 457,993 + GFF2756 0.27 +0.4 457,993 + GFF2756 0.27 -0.4 457,994 - GFF2756 0.27 -1.2 458,120 - GFF2756 0.41 -0.4 458,131 - GFF2756 0.42 +0.7 458,235 + GFF2756 0.54 +1.2 458,427 - GFF2756 0.76 +0.2 458,427 - GFF2756 0.76 -1.7
Or see this region's nucleotide sequence